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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatggtgttatatcattttgataaacttaatatctgtatcttggtcacatttttatgaaaagatatgacttgtggtttcag

Basic information

species Glycine max
transcript GLYMA02G26620.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatcattttgataaacttaatatctgtatct-tggtcacatttttatgaaaagatatgacttgtggtt-tcag------------
||||| ||    || || |  ||   || ||||||||||||  | |||||||||  ||| |||||||||| ||| ||| | |||||||||||||||||||||  | |||||| |    |       |      ||     |  | | | |     |||  ||||  ||   |||   |     || |||             
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcg--ggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G118467_T01 (Zea mays), 5'ss of exon 10
GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatcattt----tgataaacttaatatctgtatct------------tggtcacatttttatgaaaagatatgacttgtggtttcag--------------------------
  | ||||| |  |||| |  ||   || ||||||||||||  | |||||||||  ||| |||||||||| ||| ||| | |||||||||||||||||||||  | |||||| |    | |           || |||| |  ||| | | |            |  |||  ||  | | | |||||    ||| |  |||                             
TTGGAGCATCAGCGGAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTATTGATTACATATTTTACACAGgttggtgcatggagactcacccacgcacacagtagactttaattctatgtttgcagcttctgtatattcattttcctctaataagattgtgcttattcttttgatgatggcgatgtttgttctctttcag

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 11
GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagca-tggtgttatatcattttgataaacttaatatctgtatcttggtcacatttttatgaaaagatatgacttgtggtttcag--------------------------------------------------------------------------------------------
|| || ||   |||||| |||||   ||| |||||||| || || |||||||||  ||| || |||||||  || || |||||||||||||||||||||||| ||   |    || |   | |     || |      ||| | ||||      | |||  |  ||     || |   | |    |                                                                                             
GATCACCAGCGAAGGAGGATGGACCCTGGGACAAATGAGCCATTGTTCACAAATTGCACAAGGGATTTTACCGGTACCCTAGATTACATATTTTACACAGgttagtgcttaaattcttggactggttcaagcgcttgctctatctcttccctttactttggttcaagcgcttggccgcttgcgctatctcttttccttttagtttggctatctctgttgatctggaataagtagatattgtgttaacattgtcttttacaatgtgctcttctatttcag

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 10
GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatggtgttatatcattttgataaacttaatatctgtatcttggtcacattttta-tgaaaagatatgacttgtggtttcag------------------------------------------
||||| || |  || ||  ||||      |||||||||||||||||| ||| ||  ||||||||||||||||||||| || |||||||||||||| |||||| | | |  |  || ||  |     |  |  |  |  || ||| ||  | |||  | |  |  | |  | |   |||||   | |                                           
GAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACACATTGCACTAGAGATTTTATTGGCACCCTTGATTACATATTTTATACAGgtaatctttttcctacat-gtcggtttgcatctttttcctatattttatttacacatgtgcttcatacttgtagtttgtgccgttattgatgtttaggattctctaataaataagatttgtggttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481835|gb|AW201106.1|AW201106
EST:     AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG                         CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTACTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTACTGGATGAGGAGAGTT