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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGTAGACAGTGAGGGTCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAGgtgattcagttatatccttcagcttgacatttcctgctgacaagcacaagttcagctattataaacttcatcttaaatgttgggaatgcttacttctcatgaaactcatttatgaccataagttttaatcgttatccttttggcttacgctgtttacttttttaatttactgaaaattgtcttggtgttaaatttcag

Basic information

species Glycine max
transcript GLYMA02G12670.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 10
AGGGGTAGACAGTGAGGGTCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAGgtgattcagttatatccttcagcttgacatttcctgctgacaagcacaagttcagctattataaacttcatcttaaatgttgggaatgcttacttctcatgaaactcatttatgaccataagttttaatcgttatccttttggcttacgctgtttacttttttaatttactgaaaattgtcttggtgttaaatttcag
 || || ||||  ||||||| |||||| ||||||||||| || ||||||||||||||  ||||||||||||||||||| ||||| ||||||||  | ||||| |  ||   | |||    | || ||   |||   || ||   |   |||||   | |   |||  | |  |   | | ||  ||||   |                                                                                                          
TGGTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGATGTCTTGATCTGGAGCGTTTTGTACTTTATGTTATTAAGgtaag-cacaca-atcacatacctcgatggttct--ctaactcactgcagttc---tgtctcaaaactaacat---acggtgcaaatgtacag---------------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 9
AGGGGTAGACAGTGAGGGTCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAGgtgattcagttata---tccttcagcttgacatttcctgctgacaagcacaagttcagctattataaacttcatcttaaatgttgggaatgcttacttctcatgaaactcatttatgaccataagttttaatcgttatccttttggcttacgctgtttacttttttaatttactgaaaattgtcttggtgttaaatttcag
 || |||||||||||||| |||||  | |||||||||||||| || || ||| | ||  ||||||| ||||| ||||| |||||| |  |||| || ||||| |     ||| |   | |||||| |||| |  |     |  || |||        ||||||| |   ||| | ||  |  ||  |  |   | | |    |  ||                                                                                              
TGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagattacaatttgcttcagtttgagacattgcttttgcaggcat-------gctattacatttttcctgttgcagttttagtttttatgcattcattagaa----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394273|gb|EV264144.1|EV264144
EST:     TTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAAG                         GAGTTCGAACTTATAATGCAGAAGCCTTACACTATTGTATACTTTCACTC
genomic: TTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAA-Ggtgattcagt ... taaatttcagGAGTTCGAACTTATAATGCAGAAGCCTTACACTATTGTATACTTTCACTC
EST: gi|19347220|gb|BM892100.1|BM892100
EST:     TTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAG                         GAGTTCGAACTTATAATGCAGAAGCCTTACACTATTGTATACTTTCACTCT
genomic: TTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAGgtgattcagt ... taaatttcagGAGTTCGAACTTATAATGCAGAAGCCTTACACTATTGTATACTTTCACTCT