Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGCGGTGCAAAATCTGGTGTATCTGGGATAGTTTTAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGgtttgttttcaagtctttataggtcataggccatgtttggaaatgcttttccttgtattcaatggaagttctacttccatctgggacattttacaaatga...

Basic information

species Glycine max
transcript GLYMA02G10590.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 10
TGAAAGCGGTGCAAAATCTGGTGTATCTGGGATAGTTTTAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGgtttgttttcaagtctttataggtcataggccatgtt-tggaaatgcttttccttgtattcaatg-gaagttctacttccatctgggacattttacaaatga-------
||||||||| |||||| ||||  ||||||| || |||  |||||| |||||   |||||| ||||||||||| || |||||||||    | ||||| ||||| | |||  | ||     |  | |||  |   | || | |||||    || | || || ||    || |||  | | |    | |      |  |||||         
TGAAAGCGGAGCAAAAACTGGATTATCTGGAATTGTTACAGGAATCATAATAGGCTGTGCTCTTTTGTTTCTGACTCCATTATTTACAGATATACCCCAGgtctctttctatgt-----tgaggcatttgttttcttgtagaaat----ttacatgaatccaggatgatgttagagtcctggtttgatagcatagcaaatactaccatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333563|gb|GR848481.1|GR848481
EST:     GACCTGTGCACTTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAG                         TGCACCATTGCTG
genomic: GACCTGTGCACTTTT-GTTTCTAACACCATTATTTGAGTACATACCTCAGgtttgttttc ... aacaatccagTGCACCCTTGCTG