Sequence
atgc intronic sequence ATGC exonic sequenceTGAAACATATATGCAACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAAAAAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGgtaagatatgctgtcacatatagacacttgttagtaaaaaataggtgattttacaactgaagaatgtcagtctcagttgctcagtataatatggttgttctgataattgtatgaatcactcag
Basic information
species | Glycine max |
transcript | GLYMA02G10220.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0059g00300.t01 (Vitis vinifera), 5'ss of exon 10
TGAAACATATATGCAACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAAAAAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGgtaagatatgctgtcacatatagacacttgttagtaaaaaataggtgattttacaactgaagaatgtcagtctcagttgctcagtataatatggttgttctgataattgtatgaatcactcag
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TGAACCATACCTTCGACTTCTTGAACCTGAGATGCTCCTTGAGAAGCAGAAGAATGAGCTAAAGAGGCATGAAGCATGGTGTGTTTATGGGGCCTTGCTGgtgagttttgttctaatgtgtttgtaat-gtta-tccagtatgagaagtcctaagat---gggctatatgttgcatgtaatgag---aacatgtttcttttattctttctttctag-------
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0059g00410.t01 (Vitis vinifera), 5'ss of exon 3
TGAAACATATATGCAACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAAAAAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGgtaagatatgctgtcacatatagacacttgttagtaaaaaataggtgattttacaactgaagaatgtcagtctcagttgctcagtataatatggttgttctgataattgtatgaatcactcag
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TGAACCATACCTTCGACTTCTTGAACCTGAGATGCTCCTTGAGAAGCAGAAGAATGAGATAAAGAGGCATGAAGCATGGCGTGTTTATGGGGCCTTGCTGgtgcgttttgtttcta---atgggtttgtaatgttatccagtatgagaagtcctaag-atgggttatatgttgcatgtaacgag---aacatgtttcttttattctttctttctag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51341393|gb|CO982710.1|CO982710EST: NNNNTGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTG CGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTT
genomic: AAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGgtaagatatg ... aatcactcagCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAACATATATGCAACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAAAAAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGgtaagatatgctgtcacatatagacacttgttagtaaaaaataggtgattttacaactgaagaatgtcagtctcagttgctcagtataatatggttgttctgataattgtatgaatcactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG