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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTATGCGTGTGGAGAAAGAACACGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgttatttttggggctctcccttcttgccttaatatgcagttactgacttgtgactgagttttcaacactcatagttgagcctagaattttcctc...

Basic information

species Glycine max
transcript GLYMA02G09390.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208262955|gb|GE062431.1|GE062431
EST:     AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACG
genomic: AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACG
EST: gi|20075796|gb|BQ094579.1|BQ094579
EST:     AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
genomic: AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
EST: gi|23732761|gb|BU764555.1|BU764555
EST:     TATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
genomic: AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
EST: gi|11274709|gb|BF325044.1|BF325044
EST:     AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACGCAGCACCCAA
genomic: AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAA
EST: gi|298195439|gb|HO039270.1|HO039270
EST:     AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
genomic: AATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
EST: gi|193707656|gb|FK645912.1|FK645912
EST:     ATTTCTGGAAG                         AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
genomic: ATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTATGCGTGTGGAGAAAGAACACGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACATTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgttatttttggggctctcccttcttgccttaatatgcagttactgacttgtgactgagttttcaacactcatagttgagcctagaattttcctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc