1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtactttttatttcccttttccctgtaaaagatagtggcttgcattcttggggatacattgatgtattgtgttcacacacatgcctcttccattcattga...
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAATTGAGTTAGCT-AAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAG-TTTGAAATGATTCCEST: gi|208096240|gb|GD891724.1|GD891724
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|151397877|gb|EV267750.1|EV267750
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|193514452|gb|FK467940.1|FK467940
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|193490177|gb|FK457262.1|FK457262
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|207790586|gb|GD763053.1|GD763053
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|193306260|gb|FK273283.1|FK273283
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: TGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|254342219|gb|GR853356.1|GR853356
genomic: TGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|209700024|gb|BW656205.1|BW656205
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|14011960|gb|BG726882.1|BG726882
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|209721610|gb|BW671737.1|BW671737
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|209728114|gb|BW655349.1|BW655349
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|207800954|gb|GD775133.1|GD775133
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|298187661|gb|HO034810.1|HO034810
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGGAGGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCEST: gi|254342218|gb|GR853355.1|GR853355
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
EST: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGG GTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
genomic: GAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtacttttta ... ggccctgcagGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGgtactttttatttcccttttccctgtaaaagatagtggcttgcattcttggggatacattgatgtattgtgttcacacacatgcctcttccattcattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc