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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca...

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgt-acttcctcttt------aacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
 |||||  | ||||||||||| || |||||||| ||||||||||| || ||||| || || || || || ||||||||| | || |||||||||||||| || | || || |||      |   |  ||  ||   | | | | ||    |||||   |  |||||    ||  ||    ||  | |                    
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatga-taaactaagggttttggattgccttcattag-------------------

upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgat---acacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
 |||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| |||  ||||| |||    | ||   | |   | ||      ||| |||| |    |      || ||||   |  |  |  ||                     
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtgataatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag-----------------

upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
  ||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| |||  ||||| ||| |  | ||      | | |   |    | | ||| |   ||  |  |  |  |    ||  | ||         | |          
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttgagataatgggataatgaaaagtgaatcatgcattg---cttaattagaaactgggtattctgtttttcctctgtcag---------

upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G837932_T01 (Zea mays), 5'ss of exon 1
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgat---acacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca
  ||||||| ||||||||||| || |||||||| |||||||| || |  ||||| || ||||| || |||||||||||| | || |||||||||||||| |||  ||| | ||||   | ||   | |   | ||      ||| |||| |    |      || ||||   |  |  |  ||                     
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGTTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcttgtttattataatcggataatgaagtgaatcatgcatttcctaattataaactgatgattctgtttttctgctgtcag-----------------

upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctct--ttaacttgatacacacaggtagcctttgcctttcatgggcact--------ctaagaagatt----taatcatattattgaagaaaactaa----ttaaatatca--------------------------------
| ||||  | | |||||||||||| || ||||| ||||||||||| || |||||||| ||||| || ||||||||||  || || |||||||| | |||||| | ||   |   ||  |||  |  |         |||| | ||   |  |  ||           ||| ||||    | ||||| || |   ||||   |      |||   ||                                  
ATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacag

upper sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 10
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtacttcctctttaacttgata---cacacaggtagcctttgcctttcatgggcactctaagaagatttaat--catattattgaagaaaactaattaaatatca
  |||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| || |||||||||||| |||| ||||| ||||||||||| ||  |||| |  ||   |    | |  |   | |||      |  |     |   || |   ||||     ||| ||| |   |      | |   |     
GTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGTATACTTTCAGGAATATCAGgtgctctctctctctctctctctctctcttatagaacctagtgactgaaaatttaacttaggtcaatttggctccattttacttgtgctgctcactggga-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399979|gb|EV269850.1|EV269850
EST:     CAAGAATATCAG                         GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG
genomic: CAAGAATATCAGgtacttcctc ... ctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTG