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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTGgttagtttttcaattacaagttgagtttttctaccatgttattgttctttgccatcatgtattaatgcattgaatatgttttacttcacag

Basic information

species Glycine max
transcript GLYMA02G07370.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 10
CCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTGgttagtttttcaattacaagttgagtttttctaccatgttattgttctttgccatcatgtattaatgcattga-atatgttttacttcacag
|| || || ||||| |||||| |||||||||||||||||||||| |||||   ||||||  ||||||| |||||| || ||    |  ||  ||    ||||||    ||||   |||| | |    ||||| ||  |   ||   |||||  ||  |  ||||
CCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAATTTCTAATATCTGCAGTAGTTGGTCTGgttggtcttct--tggcagatt---cttttcttt--tgttgcagttcat-gtttacatgtctttcttggttatcatatgactttttgtacag

upper sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 10
CCAGAAAAGAGAAATCCTGGATTGACTCCAATGGATTGGGTCAAGTTTCTTGCATCTGCTATAGTTGGGCTGgttagtttttcaattacaagttgagtttttctaccatgttattgttctttgccat-catgtat-taatgcattgaatatgttttacttcacag
|||||||||| |||||| || || ||||| ||||| |||||||||||  |||| |||||| ||||||||||||| || | ||  ||      |  |   | | ||  ||||   || | |||| | | |||  || |  | || | |  |||| || ||| ||||
CCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTGgtcagatatttgat-----atccataatatttaatatgtagatggtttttgtctttcatccatcttgttcactta-catgtctttctttacag