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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttttcattagacttgtaagttgtaacgtctccatttttcaatgctttaacattttttttgg...

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 11
AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttttcattagacttgtaagttgtaacgtctccatttttcaatgctttaacattttttttgg---
|     |||||  ||  |||   | ||||| |   |  |||  |   | ||||||||| ||| |||||| || |||||||||| |||||||||||| ||||||      ||   | |||||    || |   || |   || |   | ||  | |   ||  |||    | ||  |||  |   | ||    |  ||  |   
AGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGgtaagctcattgcgttttctcaaattggtgtcatcttcattgtacctcgatctat---tttaaactaaccaatgcttccttttatcaagccatacttgagtaa

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttttcattagacttgtaagttgtaacgtctccatttttcaatgctttaacattttttttgg
|||||||| | | ||||||| ||  |||| |||  |  | |||| | | ||||||||  || |||||||||| |||||||| ||||||||||| || ||||||  ||         | | || |         ||| || ||   | |    ||  || | |    | |   || ||    ||||||             
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagtagagaacgcttacacttt---------tgtcatcttctttgaagaatgagagatcttgaatgtgttttctttg--gctttag------------

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttt--tcattaga--cttgtaagt-tgtaacgtctccatttttcaatgctttaacattttttttgg
|||||||||  |||| |||| ||| ||||  ||  ||||||||| ||| || |||||| |||| |||||||||||||||||||  |||||||| ||||||||||||   | | || |  |||||   || ||   | | ||   | |||||   ||||| | | |||  | |     ||||  | |||||    | |  |     
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactat-ctataatctgttccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgcttactgaatactc----