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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGgtactatcagctttcctgtgatcaataccatttagaaacttagtattttcatttcagtgatttaacagtgttaagttggacaaatttgtgggattatggcag

Basic information

species Glycine max
transcript GLYMA02G06720.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 12
GTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGgtactatcagctttcctgtgatcaatac--catttagaa-acttagtattttcatt-tcagtgatttaacagtgttaagttggacaaatttgtgggattatggcag------------------------------------------------
|||  ||||||| || |||||||||||||| |||||||| ||||||||  |||| ||||||||| | | || | | ||||  |||    |||| | || | ||  |||||   || || |  || | |       | |||   ||||| | ||   ||   |                                                   
GTTGCTGACTGGGTCGATCCTGGCTCACGAGATGATGCATGCATGGCTCCGACTGAAAGgtact-ttatctgttcagtgacaaatgttgcattgacaatagtttctatttaagttctctgaaatatgattaatccatgttcttcaaatat-tgcacttcctgtgtttccattcataatgagaagctagaaattaataaccaagtgtttggcag

upper sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 15
GTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGgtactatcagctttcctgtgatcaataccatttagaaacttagtatt-ttca---tttcagtgatttaacagtgttaagttggacaaatttgtgggattatggcag-----------------------------------------------
 ||  |||| ||  | |||||||||||||| |||||||| |||||||| | ||| ||||||||  | | |  | | ||||  ||||     | || | ||  |  | ||||     || |  || | |      || |||   ||||| | ||   ||   |                                                  
ATTGCTGACCGGGACGATCCTGGCTCACGAGATGATGCATGCATGGCTCAAACTGAAAGgtac--ttatccgttcagtgacaaatattgcgttgacaattgtttctattcaagccctctgaaatgtgattaatctatgttcttcaaatgt-tgcacttcctgttttccattcataatgagaagctagaaattaataaccaagtgtttggcag

upper sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S231_3V6.1 (Physcomitrella patens), 5'ss of exon 11
GTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGgtactatcagctttcctgtgatcaata--ccatttagaaa--cttagtattttcattt-----cagtgatttaacagtgttaagttggacaaatttgtgggat-tatggcag-----------------------
 || || || || || ||||||||||||||| |||||||||||||| || | ||  | ||||    ||| |||||   | |  |||  ||| | | |||   | | |   |||| ||     |||| |  || |  || |       | |  |||  |  || | ||| |                        
ATTGTTAACAGGGTCTATCCTGGCTCACGAACTGATGCACGCATGGATTCGTCTCGACGgtaagcgcaggtttccatggttttataaaccactgaaaaaagttcattgcattcacttgaacacagttacatatctctgattgaagaaaaaggtttcagctatatgtggaacgggttgttttttaatacgtgcag