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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatgtgtgaaacccctgcagtacttcaatataaaatttcaatcaacattttactgcttcgacttgatataatcctaaccaggcattatcctctactgtag

Basic information

species Glycine max
transcript GLYMA02G06160.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
GATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatgtgtgaaacccctgcagtacttcaatataaaatttcaatcaacattttactgcttcgacttgatataat-cctaaccaggcattatcctctactgtag-----------------------------------
         ||||  |  | ||| | | |    || |  | |  ||| ||||||||||||||||| ||||||||||||||||||| || ||| ||| |    || ||   | |  | ||| ||      || |     | |   ||  | |||   || ||      | ||    |  | |                                     
---------GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgga-ttttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126327|gb|BG790765.1|BG790765
EST:     TCCAGATATCCATATTCCTCAGTTTATGGTG                         CTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
genomic: TCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatg ... tctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
EST: gi|21888118|gb|BQ741331.1|BQ741331
EST:     CTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTG                         CTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT
genomic: CTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatg ... tctactgtagCTTCCTCTTTTTCTGAAAGATCAGAACGAGAAGGCGAATCAGCTCAGAGGT