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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAGgtcagggttgctgctgctgttgcttcttttagttaatcattggcattttattttctgttgtcagttgtttcacttacccaacctttccttcaattattacaaatatgttatgcttgttctttacag

Basic information

species Glycine max
transcript GLYMA02G05950.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996832|gb|BM086204.1|BM086204
EST:     TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAG                         CTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTTC
genomic: TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAGgtcagggttg ... ttctttacagCTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTTC
EST: gi|192301289|gb|FG988064.1|FG988064
EST:     TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAG                         CTTTCATACAGG-CAA-CTCAGGTAGTTCTGTTTATGACTGCAGTTG
genomic: TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAGgtcagggttg ... ttctttacagCTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTG
EST: gi|58020577|gb|CX707319.1|CX707319
EST:     TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAG                         CTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTT-
genomic: TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAGgtcagggttg ... ttctttacagCTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTTC
EST: gi|24205683|gb|BU964936.1|BU964936
EST:     TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAG                         CTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTTC
genomic: TATAATGGCATGACCCAAATTGGTTTTGAGAAACCCCACCATGATTTTAGgtcagggttg ... ttctttacagCTTTCATACAGGGCAAACTCAGGTAGTTCTGTTTATGACTGCAGTTGCTTC