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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttggatctgaatgtttctcagatattttaatttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacag

Basic information

species Glycine max
transcript GLYMA02G04320.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04320.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 8
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttggatctgaatgtttctcagatattttaatttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacag
||||| || |||||||||||||||||||||||  |||| |||||||||||||| |  || || ||||| |||   |    ||| ||  |    | | |  | |||    ||| | | || | |     ||| ||  ||||   |     | |   | ||     |      || ||                         
ACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTTgtaagtcaaac---aatattcattgtttttgtgcaatta--tctaaaacagctttcc-----gttcttccagtggcca--aaccacaagctttaaaactggaaatatgatat-----------------------

upper sequence: GLYMA02G04320.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttggat----ctgaatgtttc--tcagatattttaat-ttagacttaatatacctgttcaaagtgttatttgagtgagtactgttctctttccttgggcatttcctcattattcatatttcttaccctgttctacag----------------------------
||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| ||||| ||    |     || |||||||   ||   |  | |     |  ||    ||  |   ||   |     || ||  ||   ||      |     |||  | ||    | || ||  | |   |||||    |  | ||                            
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatatgtttgg--accacctacaccaattgttc-ttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717502|gb|BW654405.1|BW654405
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120490930|gb|EH219097.1|EH219097
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120495674|gb|EH223841.1|EH223841
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|15204829|gb|BI427597.1|BI427597
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
EST: gi|17518503|gb|BM187545.1|BM187545
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTTCA-CCTGGA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCT-CAACCTGGA
EST: gi|120529136|gb|EH257270.1|EH257270
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31471775|gb|CD413803.1|CD413803
EST:     CAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: CAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064228|gb|BU579001.1|BU579001
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20498019|gb|BQ272949.1|BQ272949
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064069|gb|BU578842.1|BU578842
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22525213|gb|BU084024.1|BU084024
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120534088|gb|EH262221.1|EH262221
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22522320|gb|BU081131.1|BU081131
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCT
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCT
EST: gi|120529217|gb|EH257351.1|EH257351
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31465137|gb|CD407165.1|CD407165
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|22522821|gb|BU081632.1|BU081632
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31561742|gb|CD487580.1|CD487580
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAAGCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20813120|gb|BQ297598.1|BQ297598
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13482372|gb|BG511715.1|BG511715
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATNGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagAT-GGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAA
EST: gi|120530295|gb|EH258429.1|EH258429
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATC
EST: gi|22525567|gb|BU084378.1|BU084378
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120495271|gb|EH223438.1|EH223438
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13481734|gb|BG511077.1|BG511077
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|37996526|gb|CF808115.1|CF808115
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ANTGGGAGTTATGCTCAATCCACCTCAAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagA-TGGGAGTTATGCTCAATCCACCTCAAC
EST: gi|208071978|gb|GD867698.1|GD867698
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23064220|gb|BU578993.1|BU578993
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|193642786|gb|FK587716.1|FK587716
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31475761|gb|CD417789.1|CD417789
EST:     TATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: TATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120494927|gb|EH223094.1|EH223094
EST:     AATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: AATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13481252|gb|BG510595.1|BG510595
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|17519349|gb|BM188391.1|BM188391
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20448749|gb|BQ252873.1|BQ252873
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTC
EST: gi|193715695|gb|FK648970.1|FK648970
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|7326948|gb|AW620746.1|AW620746
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAGATGTTCTAGCGCAGATATCT                         ATGGGAGGTGTGCTCATTCCACCTCAACCTGGAGATATTTCTTATGAC
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGAC
EST: gi|17400294|gb|BM177076.1|BM177076
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|16349405|gb|BI975000.1|BI975000
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|20812986|gb|BQ297464.1|BQ297464
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagttgga ... tgttctacagATGGGAGTTATGCTCAATCCACCTCAACCTGGAGATATTTCTTATGACAAA