1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGAGATCTTGGCTTTGCATCTGAGCTTGGAAACTATGCTGAATACAGCGGTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacctatatctctgcgttgcttttggtctaaatatcaatttagagatttagcattcatgcttacatgatcagaatgtccttgtccgaattgtcccaatatagctcttatgatatgcatgctaactttgcacctgataccattggtattttgtatctattataacctccttttttctttccag
species | Glycine max |
transcript | GLYMA02G04120.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|14206380|gb|BG840058.1|BG840058
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCNTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|57575455|gb|CX548430.1|CX548430
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|23734638|gb|BU765558.1|BU765558
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|9564586|gb|BE474095.1|BE474095
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|192305538|gb|FG994304.1|FG994304
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|4397575|gb|AI496572.1|AI496572
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|6725270|gb|AW309669.1|AW309669
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|58016426|gb|CX703168.1|CX703168
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|10253979|gb|BE821689.1|BE821689
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGNNCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|209701248|gb|BW652226.1|BW652226
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: CAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|19453151|gb|BM954561.1|BM954561
genomic: CAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGAEST: gi|6134504|gb|AW132897.1|AW132897
genomic: GTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGGA
EST: TGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAAAGTTGTAATTTGAT TGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGG
genomic: TGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATT-GATgtaattaacc ... ttctttccagTGTGCAACTGCAAACCCTGATGGCCAGAAGAGAGCTCTTGTGATAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGATCTTGGCTTTGCATCTGAGCTTGGAAACTATGCTGAATACAGCGGTGCACCCAAAGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTAATTGATgtaattaacctatatctctgcgttgcttttggtctaaatatcaatttagagatttagcattcatgcttacatgatcagaatgtccttgtccgaattgtcccaatatagctcttatgatatgcatgctaactttgcacctgataccattggtattttgtatctattataacctccttttttctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG