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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattaagatacatggaagctttaaagacacttgaaatcttgttgttgaatacattaaactgtcatgttcatgatcattttatgtc...

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 11
ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattaa-gatacatggaagctttaaagacacttgaaatcttgttgttgaatacattaaactgtcatgttcatgatcattttatgtc
||||| || |||||  | || |||||||| || ||||| |||||||| || ||||| |||||||| || |||||  ||||||||||||||| || |   |  ||| ||   ||| || | |||  |   || |   |  |||  |||  | | |    |  |   || |     ||||||   | 
ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTGCTGCAGTACTCTCCGAACCTTCGTAGCACAGCTgtgagtacattgaatttctaatgagctatgcaatcattattg-ttctagttttgctgtctttgcttccttctggcaatgccgtactaagccatttttgctt

upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 10
ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattaagatacatggaagctttaaagacacttgaaatcttgttgttgaatacattaaactgtcatgttcatgatcattttatgtc
 | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | || |||      || |   ||            |||| |||   | ||| |     | || | ||||| |  || |                        
GTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCAgtaagt------ttctcccaaatcgtcca----ctttgaagggccctgacac----tggtggtatacacttcacag------------------------

upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 10
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 10
ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattaagatacatggaagctttaaagacacttgaaatcttgttgttgaatacattaaactgtcatgttcatgatcattttatgtc
 | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | || |||      || |   ||            |||| ||||    ||| |     | || | ||||| |  || |                        
GTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCAgtaagt------ttctcccaaatcgtcca----ctttgaagagcactgacac----tggtggtatacacttcacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310212|gb|GE107630.1|GE107630
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGACCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193667331|gb|FK608071.1|FK608071
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|17023669|gb|BM094703.1|BM094703
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193366095|gb|FK329060.1|FK329060
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|16349285|gb|BI974880.1|BI974880
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193392613|gb|FK358772.1|FK358772
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207820675|gb|GD792526.1|GD792526
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193351994|gb|FK316359.1|FK316359
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193359920|gb|FK324242.1|FK324242
EST:     CTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: CTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193356255|gb|FK321428.1|FK321428
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207797958|gb|GD768522.1|GD768522
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|13791263|gb|BG653854.1|BG653854
EST:     ATCTCGTTTTTTGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|193349034|gb|FK318152.1|FK318152
EST:     AATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: AATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|207749260|gb|GD720090.1|GD720090
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|208218102|gb|GE016120.1|GE016120
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|13562753|gb|BG550973.1|BG550973
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|208249791|gb|GE045470.1|GE045470
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|9901022|gb|BE609988.1|BE609988
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
EST: gi|7590534|gb|AW706284.1|AW706284
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACT