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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagcctttattttctgcaaaacaaacatgtttttcacaaaagattgtgcttctgtgttaatatttactggtattctgtttcatctattgtagattgtg...

Basic information

species Glycine max
transcript GLYMA02G00750.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00750.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 10
AATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagc-------ctttattttctgcaaaacaaacatgtttttcacaaaagattgtgcttctgtgttaatatttactggtattctgtttcatctattgtagattgtg
||||||||| || |||||||| || ||||| |||||||| ||  |  ||||  | |||||||||||||||||||||||| ||||||||     |||||||||           ||||  ||||||  |       || || |||    |  |  |   ||| |    |||  | |||||  || |   |   ||   |||       
AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactttgctttctgatagcattttatattgttccttgacaaacggatttcagcaa-aattctgactggatttatcgctgggcttgagtaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193718862|gb|FK655240.1|FK655240
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCNTCAAG                         GATAAATACATGCAGGACAGGCTTGTGAGACTTGTCTGTTGTTTTTCTGCA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGT-GTTTTTCTGCA
EST: gi|13562521|gb|BG550741.1|BG550741
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGA
EST: gi|209723773|gb|BW665682.1|BW665682
EST:     TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAG                         GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA
genomic: TCATTCACATGTACATAACTAATTGTATAGCATCTTGTGTGGGCATCAAGgtaagccttt ... tttttctcagGATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAA