Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGGTGTTGAATGGGACAAATTGTACCAAATGCAGGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGgtatattatatatctttatgttcatggatatagaagagctaatcattttttcatagtgaactagtgtcatgatattttgttttactaatgatgtgtag
Basic information
species | Glycine max |
transcript | GLYMA02G00580.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G00580.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 9
CAAAGGTGTTGAATGGGACAAATTGTACCAAATGCAGGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGgtatattatatatctttatgttcatggatatagaagagctaatcattttttcatagtgaactagtgtcatgatattttgttttactaatgatgtgtag
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TAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTGAGAAGTTTGAAGAGgt----taggggtcgtttctttt---ggcctaaaggaatt---cagtttc----aataagttggtataa--atgttattcctatggtgtgttttgcag
upper sequence: GLYMA02G00580.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 9
CAAAGGTGTTGAATGGGACAAATTGTACCAAATGCAGGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGgtatattatatatctttatgttcatggatatagaagagctaatcattttttcatagtgaactagtgtcatgatattttgttttactaatgatgtgtag
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TGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTGAGAAGTTTGAAGAGgtgag--gagtgcttctacttgtatgagtgttgtgga--tactcctgcttggagatgtttttgttgctgatttaccccctattgattatgaggcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14009256|gb|BG725860.1|BG725860EST: CTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAG GGGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAG
genomic: CTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGgtatattata ... tgatgtgtagGGGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGGTGTTGAATGGGACAAATTGTACCAAATGCAGGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGgtatattatatatctttatgttcatggatatagaagagctaatcattttttcatagtgaactagtgtcatgatattttgttttactaatgatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG