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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaagtgacttatgttgcatcatattgactagtgactaccctattttgtgaattag

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 10
GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaagtgacttatgttgcatcatattgactagtgactaccctattttgtgaattag---------
|| || ||||| ||||| ||||| || ||||||||||| || |||||||||||  | ||||| |||||| |||||||||| || ||  ||  |||||||||||||  |   ||  |   | |||       ||||  |      |   | || ||| || |      |  | | ||| |||          
GGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGGGTGCACCTACTCTGTATGACCATCCAGGGTCAGCTTATGGAAgtaagtcttctgctacgaagatca-caggtttgacacaaagca-actttgttaactggttaaatgttttctatttgacttacattgactag

upper sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G36960.2 (Arabidopsis thaliana), 5'ss of exon 8
GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaag------catcaagcaccagtgttcaattaaagtgacttatgttgcatcatattgactagtgactaccctattttgtgaattag
|| || ||||| || ||  ||||||| ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||  | || | | |  ||||||||||||||      ||  |   |  |       | || |   |  |   || || |  |||    || || |  |  | |||||   ||||
GGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaagacgactcactatataataccaacatactagaaacaaatgaatttcagctcatta---agagaat-tctcactttgtc--ttag

upper sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 10
GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaagt---gacttatgttgcatcatattgactagtgactaccctattttgtgaattag-------
|| |||||||| |||||||||||||||||  | ||||| ||||||||||| ||||| ||||||||||| ||||||||||| || ||| || ||||||||||||||||||   | | ||| | ||  |  |||   |   | | |  || || | | | |  |   |     ||| |||    |         
GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatctt-ctcaagtatgcacgtggagttttgcactgtttatcaacacaattatttctttgtttttaattctgttgcatgttggttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020024|gb|CX706766.1|CX706766
EST:     AGCACTTGGTGCTCNTACTTNGTATGACCAACCTGGCCCAATTTATGGAA                         GAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
EST: gi|58023593|gb|CX710334.1|CX710334
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAA                         GAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAA                         GAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
EST: gi|58024913|gb|CX711654.1|CX711654
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAA                         GAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
EST: gi|58020404|gb|CX707146.1|CX707146
EST:     AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAA                         GAG-A--CCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTC