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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTTCATTTCCCCAATCAGTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaaatttttgtgccatttgttatgcatcagaaatgtgttgccgctctgattaaatccaattgctcttgtaattgttttctcttggcaattaat...

Basic information

species Glycine max
transcript GLYMA01G38890.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011826|gb|BG726748.1|BG726748
EST:     GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG                         GTATCAACTAATTAGGGTGCATGCAAGGGGGCTTGGAGAAAATTGCAAGTG
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
EST: gi|192299613|gb|FG989995.1|FG989995
EST:     TTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG                         GTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
EST: gi|22934032|gb|BU551171.1|BU551171
EST:     GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAG                         GTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG
genomic: GTGTCTGAGGAAACTGTTGACACTACCGATCGATATGATTCTTTGGTCAGgtacgtgaaa ... tggttaacagGTATCAACTAATTAGGGTGCATGCAAGGGGGCTAGGAGAAAATTGCAAGTG