Sequence
atgc intronic sequence ATGC exonic sequenceTAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccgttaatcaactgttttctgactatattaaatttaaactcgttacttatgaattggtgaacaattaaccccttgaatatattttccctgctttggtctaaagggtatattttgtgcag
Basic information
species | Glycine max |
transcript | GLYMA01G37100.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G66210.4 (Arabidopsis thaliana), 5'ss of exon 9
TAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccgttaatcaactgttttctgactatattaaatttaaactcgttacttatgaattggtgaacaattaacccct-tgaatatattttccctgctttggtctaaagggtatattttgtgcag
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TAGCACACTTGACGAGGCAGAGATCTCTGACCTCAGAGATCAATTTGATGCGATTGATGTGGATAAAAATGGCGTCATTAGTCTTGAAGAGATGAGACAGgtaa------aagctcatgatattttgctttaagaacatta--ctagttaaatctaggc--atgatcagttaatctttatgcatccatttggcctttttt---ctacag----------------
upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 9
TAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccgttaatcaa--ctgttttctgacta-tattaaatttaaactcgttacttatgaattggtgaacaattaaccccttgaatatattttccctgctttggtctaaagggtatattttgtgcag
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AACGACACTTGATGAGGAAGAGTTGGCTGATCTTCGAGACCAGTTTGATGCGATTGATGTTGACAAGAATGGTGTCATTAGCCTTGAAGAGATGAGGCAGgtaaaaatgaagacaaaactatacctcaatcactagcaaaattgatcaggaaa-tactaagcctgacatcagtt--cttgttatatatatag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207835058|gb|GD809115.1|GD809115EST: CAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAG GCTCTTGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTAGAG
genomic: CAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccgtt ... ttttgtgcagGCTCTTGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGgtaacccgttaatcaactgttttctgactatattaaatttaaactcgttacttatgaattggtgaacaattaaccccttgaatatattttccctgctttggtctaaagggtatattttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG