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TGACATGCCCACTGTTGGAGTTGTAACTTTATATTCGTCCCTTCTCACCTTCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttcatttcaaactgtttgctttgcacattttcatgttttaacttttttcattcatacaattaatcttacctgaatgtagccattgacattgttt...
species | Glycine max |
transcript | GLYMA01G36870.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTG GGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAAATTGAGGACAACAAEST: gi|208031536|gb|GD830372.1|GD830372
genomic: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttca ... tgcttgttagGGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAA-TTGAGGACAACAA
EST: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTG GGAGCATGTGTG-AAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAGEST: gi|208225355|gb|GE025410.1|GE025410
genomic: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttca ... tgcttgttagGGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAG
EST: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTG GGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAGEST: gi|207691559|gb|GD675248.1|GD675248
genomic: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttca ... tgcttgttagGGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAG
EST: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTG GGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAG
genomic: TCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttca ... tgcttgttagGGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACATGCCCACTGTTGGAGTTGTAACTTTATATTCGTCCCTTCTCACCTTCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGgtatgtttcatttcaaactgtttgctttgcacattttcatgttttaacttttttcattcatacaattaatcttacctgaatgtagccattgacattgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA