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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTCCAAGGAATGCCTCTTGTCCAAGGCTCAGACAAATACTTTTGGTTTGGTCAGCCACAGTTAGTTCTACATCTTATCCATTTTGCTTTGTTCCAGgtatgcaatagatttccttttagaagatactgggataaatgtttttgatacggaatagacaatatataactactgagatttgaagttcaatgcagccttt...

Basic information

species Glycine max
transcript GLYMA01G36170.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
AGTTGTCCAAGGAATGCCTCTTGTCCAAGGCTCAGACAAATACTTTTGGTTTGGTCAGCCACAGTTAGTTCTACATCTTATCCATTTTGCTTTGTTCCAGgtatgcaatag-atttcctt-ttagaagatactggg--ataaatgtttttgatacggaatagacaatatataactactgagatttgaagttcaatgcagccttt--------------------------------------------------------------------------------------
||| |||||||| || || ||||| ||||||||||||||||| ||||||||| ||  ||| ||||||||||| |||||||||||||||| |||||| ||||||   |  || |  ||| |  || ||   ||| |    ||||| || |  | ||  |  ||| | | | | | | |   |   |   ||||| ||      ||                                                                                      
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcaga-attctttgagttcaatgtcctt--gttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334106|gb|FK026263.1|FK026263
EST:     TTGGTCAGCCACAGTTAGTTCTACATCTTATCCATTTTGCTTTGTTCCAG                         AATGCGTTCCAAATAACATATATCTTGTGGATATGG
genomic: TTGGTCAGCCACAGTTAGTTCTACATCTTATCCATTTTGCTTTGTTCCAGgtatgcaata ... acacttgcagAATGCGTTCCAAATAACATATATCTTGTGGATATGG