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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATGTCTTGTCCTCATGTAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgcatgtttggtttcacatcttagatgtgttttttcacatttactaagaaactaatagttattacttccacattcaaacatgatttcttatt...

Basic information

species Glycine max
transcript GLYMA01G36000.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
TCTATGTCTTGTCCTCATGTAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgc--atgtttggtttcacatcttagatgtgttttttcacatttactaagaaactaatagttattacttccacattcaaacatgatttcttatt
|| ||| | || || ||||| || ||||| ||  |  | ||||||| ||   |||| ||||||||||||||||| |||||||| || ||||||||||| ||||  |  ||   || |  | ||   ||  | |    |  ||  |  ||||  || | ||  |   | |   || || ||                      
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcatt--ctcacaagtttcaaatc-ctatttgcag---------------------

upper sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
TCTATGTCTTGTCCTCATGTAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgcatgtttggtttcacatcttagatgtgttttttcacatttactaagaaactaatagttattacttccacattcaaacatgatttcttatt-----------------
|||||| ||||||| |||||||| |||||||   |||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||  |  | ||      ||| || | || |   ||  || || | | ||  | |      || | |||| ||  | ||  ||| | |  |  |   |||                 
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttcca-----agttccaaaactca--cgttgttctttatagtttttgaa----caaaaattatgaccccaac-ctcagaaaaaaactgacattacaaaaggaaaatgcag