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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGCAGAATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTAGACGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctagtttgatcaagtagttcctaaattgttattattgttgttcacttattctttagattgactggattgatgaataacagccttagaaattttg...

Basic information

species Glycine max
transcript GLYMA01G35690.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 5'ss of exon 6
ATGGTGCAGAATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTAGACGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctagtttgatcaagtagttcctaaattgttattat--tgttgttcacttattctttagattgactggattgatgaataacagccttagaaattttg--
|||||||||  |||||||| | ||||||   |||||||| ||||| || ||  | ||||| ||||||||||| ||||||||  |||||||||| ||||||||  ||  | |  ||   | |  || |     |||||| ||    || || ||| ||| || | |||   ||   |  |        |    ||||||  |   
ATGGTGCAGGCTTGATAGGATGTGGTTTGGACATCCTGGAGTTTTGGAAGGAACAATGACCAGACAACCTTTCCTCTGTCCAATGGATCATGTTTTTGAGgtgattacactggga---atttttttcatttctgttatcataacattatttact-atttttcatattatatgacatactattagttggttagagaaatagtttc

upper sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G011912_T01 (Zea mays), 5'ss of exon 6
ATGGTGCAGAATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTAGACGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctagtttgatcaagtagttcctaaattgttattattgttgttcacttattctttagattgactggattgatgaataacagccttagaaattttg-------
|||||||||  |||||||  | ||||||   ||||||||  ||||||| ||  | ||||| ||||||||||||||||| ||  |||||||||| ||||||||| ||||    | |  |  |  ||    ||  |    ||||||| |||  | |     |    |  |   | ||     |  |||| | | | |    |       
ATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTGGAATTTTAGAGGGAACAATGACCAGACAACCTTTTCTCTGCCCACTGGATCATGTGTTTGAGgtaattctg---taagtatttccttttataacggaggctattgtttttctataaaaaactga--tatccatactgccacct--cagcttcaaataacaggtcacttc

upper sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
ATGGTGCAGAATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTAGACGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctagtttgatcaagtagttcctaaattgttattattgttgttcacttattctttagattgactggattgatga-ataacagccttagaaattttg
|||||||||| | |||||| |||||||||| |||||||| ||| | || |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||  | |  |||  |  |        |    |  | | ||| ||||| ||  ||    ||| |    ||||    |   || |   ||||  | |  |  
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcctttaataccta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574709|gb|CX547684.1|CX547684
EST:     GGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAG                         GTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
genomic: GGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctag ... tctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
EST: gi|57574398|gb|CX547373.1|CX547373
EST:     GTCTATGACTAGACAACCTTTTCTCTGTCC-TTGGATCCATGTCTTTGAG                         GTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA
genomic: GTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGAT-CATGTCTTTGAGgtatttctag ... tctattacagGTAAATGCCATGTTGAAAGAACTCCCTGAGGAAGAGTTTGGCCCCGGAATA