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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag

Basic information

species Glycine max
transcript GLYMA01G25050.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g23740.2 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttat-atcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| || ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| || |||||||| || || ||||||||||||||   |   |  || |||    |  || ||   |||  |  |  |    || |  |  | |||||  | ||| | ||    | |                                            
GTTGATTGCGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCAACAATTCAATGGTTCCCCAAAGGATCCCTGGAGCCCAAAAAgtgaggc--tgcataacttttgttcaaatacttttgaacatctacaccagacaaaattttcatgattta--tatcactacaaccatgtag------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| || ||||| || ||||| ||  | || ||||| ||||||| | |  |   ||| |    ||    || | ||   ||||| | || |||   | | | |        | || | | | |||   ||                                        
GTTGACTGTGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatacatgcttctttgttgattactcaatcactacattttctgtcgtaaagaacaatgaccc-----taatgttaaacttactgtttag-------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtcta--ttggaatataacattgacacaattttatatcttaattc--atagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| || ||||| || ||||||||  | || ||||||||||||||       ||| ||  ||     ||| | ||     |      | | | |||||  | ||  |||    || ||  | |                                                   
GTTGATTGTGATGAGCACAAGAGTTTGTGCAGCAAGTATGGAGTTTCCGGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagcgcgtgtttaaatttttccatatcctttgtttaccaagttctgtgaattctgacagaaattcctttggcaaattag--------------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
|||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || || || || ||||||| |  ||  |  ||  ||   | ||   |  | | |||||| |||  | ||  ||| |  |  | ||    ||   ||                                                 
GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAAgtgagaa--ttcataacttctgttttgtactttccaga-aattttttattgtgataaataatgttaaatctactcttgtgcag------------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| ||||||||||| |||||| | || |  |||||||| ||   ||| |||||||| |||||||||||||| |||||||||||||||||  ||||||    |   ||||  || ||    |||    |  |  ||  ||     |||| ||  | | | | |     | ||      |  || |||   ||||  ||   |  || || ||    |||        
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt----atgctttttactgtt----tattctctctaagcagatta----cttatttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctg-ttcatcttattgaatag------