Sequence
atgc intronic sequence ATGC exonic sequenceAGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca...
Basic information
species | Glycine max |
transcript | GLYMA01G13430.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G13430.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g46450.1 (Oryza sativa), 5'ss of exon 15
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca---------
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TGTATCGGGCAAGCATATGAGGACATACAGGCACAAAACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagt--gactcaa---tgatt---tctttaaagctattatctcagataatcctctcccaagcttatagttt-tataagagttcccatttaccactgtaccaaatctgg
upper sequence: GLYMA01G13430.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0021g02140.t01 (Vitis vinifera), 5'ss of exon 15
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagttta---ctttgaaagtgatgataatttatttctacagtacatataaacaagaccctttg-tatttctca
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ACAATTGGGCAGGCATATGATGATATGCAGACTCAAAACCAACACCTATTGCAGCAAATCACTGAGAGAGATGACTATAACATTAAGgtggttagctt---atcctgtctcccctttttatctggaagtctataaagaaatattcactttcgttcatgttgtgctcatctatgtcctttagctggaggtt-
upper sequence: GLYMA01G13430.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ11831 (Selaginella moellendorffii), 5'ss of exon 15
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca
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ACTATCGGGCAAGCATATGAAGACATGCAAACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttgttagattcacgttagctagaaatg---agactaattttccgcttacag-----------------------------------------------
upper sequence: GLYMA01G13430.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ22678 (Selaginella moellendorffii), 5'ss of exon 14
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca
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ACTATCGGGCAAGCATATGAAGACATGCAGACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGgtttcttagattcacgtgagctagaaatg---agactaattttccgcttacag-----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305627|gb|FG994337.1|FG994337EST: ACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAG CTTGTTTTGGAGGGTGTAAGGGCGAGACAGAAGCAGGACTCATTGCTCATG
genomic: ACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtc ... tttggtgcagCTTGTTTTGGAGGGTGTAAGGGCGAGACAGAAGCAGGACTCATTGCTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTATAATATTAAGgtaatttgtcttgaaattggttgcacctttatagtttactttgaaagtgatgataatttatttctacagtacatataaacaagaccctttgtatttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG