Sequence
atgc intronic sequence ATGC exonic sequenceGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaattttcattttcttagagatttatctttctgaatagtatcttttatgtgcctatgttgggtggctgagctagtccacattttactgttgaattcagg...
Basic information
species | Glycine max |
transcript | GLYMA01G03930.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 5'ss of exon 11
GTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaattttcattttc--ttagagatttatctttctgaata-gtatcttttatgtgcctatgttgggtggctgagctagtccacattttactgttgaattcagg
|||| ||||| || ||||| | || ||||||||||| || || || ||||| |||||| | ||||||||||| ||||| |||||||| | || || | | | || | | | ||| | |||||||| | | || ||| ||| | || | ||
ATTGAGAAACAGGAATTTGGTCTCAAGCCAATGAATTGTCCTGGCCATTGCCTAATGTTTGAGCACAGGGTTCGTTCATACAGAGgtaaatctccttcataatggcatagttgtatcacaaaatgtatctcttttatcaagtgaaaattcctg-ctgtcaaagtaatcgcttcaaccttctgcctg--
upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 11
GTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaatt---ttcattttcttagagatttatctttctgaatagtatctttta-tgtgcctatgttgggtggctgagctagtccacattttactgttgaattcagg
||||| ||||||||||||||| | || |||||||||||||||||||| || |||||||| |||| || ||||| |||||||||||| | | || ||| ||| | ||||||||| ||||| || | || ||| || | || | | | | ||| | |
GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCATTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtgcatttgattttttatatatttatctt---aaatagcattacatggtgctcctttgctctttgag-gctccatcttagattgaggcaatagccttctt
upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 11
GTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaatt---ttcattttcttagagatttatctttctgaatagtatcttttatgtgcctatgttgggtggctgagctagtccacattttactgttgaattcagg---
||||| ||||||||||||||| | || ||||||||||||||||||||||| |||||||| |||| || ||||| |||||||||||| | | || || |||| | ||||||||| ||||| || | |||| | | ||| | ||| | | || | || | |
GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtgcatttggttccttatatatttatctt---aaatagcataacatg-gtgctt-ttttgctcttcaaggctccatcctagattga-ggcaaactaaaatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151406807|gb|EV276622.1|EV276622EST: TTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAG AACTTCCTCTTCGCTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTA
genomic: TTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaattttca ... ggttctgcagAACTTCCTCTTCGCTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGgtaattttcattttcttagagatttatctttctgaatagtatcttttatgtgcctatgttgggtggctgagctagtccacattttactgttgaattcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg