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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGAGCAATGGGTCCAAATTTGTACTCCAGCAAAGTCCAAGGTTAAAGCAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaatgtaactgatatatatatatatatatatatatatatatatagcaaaaagagcttaaatttattgtaaatgtttacaaattgttataccctttaattgtaattaagattttgcttacttactccaatgcag

Basic information

species Glycine max
transcript GLYMA01G03720.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481602|gb|AW200873.1|AW200873
EST:     CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAG                         GAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCATTTGCTAGA
genomic: CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaat ... tccaatgcagGAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCATTTGTTAGA
EST: gi|12688737|gb|BG155073.1|BG155073
EST:     CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAG                         GAAGCTG-GAACGTATCACTTGGTAACCTATTAACATATCCATTTGTTAGA
genomic: CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaat ... tccaatgcagGAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCATTTGTTAGA
EST: gi|12689205|gb|BG155541.1|BG155541
EST:     CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAG                         GAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCATTTGTTAGA
genomic: CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaat ... tccaatgcagGAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCATTTGTTAGA
EST: gi|16995716|gb|BM085088.1|BM085088
EST:     CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAG                         GAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCA
genomic: CAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaat ... tccaatgcagGAAGCTGTGAACGTATCACTTGGTAACCTATTAACATATCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAGAGCAATGGGTCCAAATTTGTACTCCAGCAAAGTCCAAGGTTAAAGCAGGACCAAGTGACTTAAGTTTCTCAGAGCAATGTACTAACTGTGAGAAGgtaagaaaatgtaactgatatatatatatatatatatatatatatatatagcaaaaagagcttaaatttattgtaaatgtttacaaattgttataccctttaattgtaattaagattttgcttacttactccaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA