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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttgatctaaatgtttctcagatattttaatttagacttaatatacttgttcaaagtgttattttagtgagtactttctctttccttgggaatttcctcattattcatatttcttaccctgttctacag

Basic information

species Glycine max
transcript GLYMA01G03260.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03260.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 8
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttgatctaaatgtttctcagatattttaatttagacttaatatacttgttcaaagtgttattttagtgagtactttctctttccttgggaatttcctcattattcatatttcttaccctgttctacag
||||| || |||||||||||||||||||||||  |||| |||||||||||||| |  || || ||||| |||   |    ||| ||  |    | | |  | |||    ||| | |  | | |     ||| ||  ||||   |    | |   | ||   | |      || ||                         
ACAGTAGACGAGATCTACAAGGTTGCATCAATCGCACTCAGTCCAAATGTTCCTGGGCAGATCTTTgtaagtcaaac---aatattcattgtttttgtgcaatta--tctaaaacagctttcc-----gttcttccagtggccaaac-cacaagctttaaaactggaaatatgatat-----------------------

upper sequence: GLYMA01G03260.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 9
ACAGTTGATGAGATCTACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttgat----ctaaatgtttc--tcagatattttaat-ttagacttaatatacttgttcaaagtgttattttagtgagtactttctctttccttgggaatttcctcattattcatatttcttaccctgttctacag----------------------------
||||| |||||||||||||||||||||||||||  ||| ||||| |||||||| |  ||||| ||||| ||    |     || |||||||   ||   |  | |     |  ||    ||  ||  ||   |     || |  ||  | ||   ||    |  | |   ||    | || ||  | |   |||||    |  | ||                            
ACAGTAGATGAGATCTACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatat--gtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491744|gb|EH219911.1|EH219911
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|209697563|gb|BW660570.1|BW660570
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|10233337|gb|BE802225.1|BE802225
EST:     ACAAGGTTGCATCAATATCACTTACTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGTAGATAT
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATAT
EST: gi|14205591|gb|BG839269.1|BG839269
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|19347413|gb|BM892293.1|BM892293
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|15815783|gb|BI788058.1|BI788058
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|14205453|gb|BG839131.1|BG839131
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCKCCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|19348485|gb|BM893026.1|BM893026
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|17400767|gb|BM177549.1|BM177549
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|51343112|gb|CO983845.1|CO983845
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31471989|gb|CD414017.1|CD414017
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31309987|gb|CD395190.1|CD395190
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31311866|gb|CD397069.1|CD397069
EST:     TCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: TCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|51337166|gb|CO981032.1|CO981032
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|14206264|gb|BG839942.1|BG839942
EST:     AAGGGTTGCATCAATATCACTTAGTCCAAATGTTCCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTNTTATGGCAAA
genomic: AA-GGTTGCATCAATATCACTTAGTCCAAATGTT-CCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31305424|gb|CD390627.1|CD390627
EST:     TCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: TCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31464694|gb|CD406707.1|CD406707
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|7234812|gb|AW570145.1|AW570145
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|7234825|gb|AW570158.1|AW570158
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31561480|gb|CD487318.1|CD487318
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCAGCTCAACCTGGAGATATTTCTTATGA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGA
EST: gi|22932146|gb|BU549285.1|BU549285
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|14205407|gb|BG839085.1|BG839085
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120529211|gb|EH257345.1|EH257345
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|7796142|gb|AW781539.1|AW781539
EST:     CAAGGTTGCATCAATATCACTTTAGTCCCAATGGTCCACCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: CAAGGTTGCATCAATATCAC-TTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120492417|gb|EH220584.1|EH220584
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|6916113|gb|AW397643.1|AW397643
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATCACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|31308160|gb|CD393363.1|CD393363
EST:     ATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|192310555|gb|FG999228.1|FG999228
EST:     AAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: AAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|27426013|gb|CA937533.1|CA937533
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|26269528|gb|CA820591.1|CA820591
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|8669453|gb|BE190560.1|BE190560
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|27424258|gb|CA935778.1|CA935778
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|13482291|gb|BG511634.1|BG511634
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|23728451|gb|BU762278.1|BU762278
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120532614|gb|EH260747.1|EH260747
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
EST: gi|120491540|gb|EH219707.1|EH219707
EST:     ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTT                         ATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA
genomic: ACAAGGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTgtgagtttga ... tgttctacagATGGGAGTTATGCTCCATCCACCTCAACCTGGAGATATTTCTTATGACAAA