Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCTTTCAAGTGTGATGATTCATGCAACCCGACCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgtactgtaccttttaacttttgaatgtgggaatttcttacattaaatatgtacaatattttttgtgtaataatcgatacccttgagtcattcttttgagcattgatgttttcatgctgtgcag
Basic information
species | Glycine max |
transcript | GLYMA01G02840.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G02840.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G10490.2 (Arabidopsis thaliana), 5'ss of exon 10
CTTCCTTTCAAGTGTGATGATTCATGCAACCCGACCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgtactgtaccttttaacttttgaatgtgggaatttcttacattaaatatgta-caatattttttgtgtaataatcgatacccttg---agtcattcttttgagcattgatgttttcatgc-tgtgcag
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CTTTCTTTCAAGTGTTATGATTCATGCAACCCGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATAGAAGGTTATGAAGTGTCTGGTACTGTGGAGgttagaatctctg-agcttagatgatgtgaattt-----tttcctagcttcggtgcacgtcattgccatacctgaacgtttccttaaaattagctagctatctttctgaat-tgcttgttgcaatgcatttacag
upper sequence: GLYMA01G02840.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0313g00020.t01 (Vitis vinifera), 5'ss of exon 10
CTTCCTTTCAAGTGTGATGATTCATGCAACCCGACCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgtactgtaccttttaacttttgaatgtgggaatttcttacattaaatatgtacaatattttttgtgtaataatcgatacccttgagtcattcttttgagcattgatgttttcatgctgtgcag
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TTTCCTCTCAAGTGCAATGATCCATGCAACTCGGCCTTTTGTTGTGAATGAATGGATTCAAACCAGAATTGAAGGCTATGAAGTTTCTGGTACTGTTGAGgtttgt-attgagtattgaacagcctgttaaattaagggcctttaggaagagat-cctatcaaatgcattgcatttcccttaatgttttggcttggccctat----------------------------
upper sequence: GLYMA01G02840.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ29482 (Selaginella moellendorffii), 5'ss of exon 6
CTTCCTTTCAAGTGTGATGATTCATGCAACCCGACCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgt-actgtaccttttaacttttgaatgtgggaatttcttacattaaatatgtacaatattttttgtgtaataatcgatacccttgagtcattcttttgagcattgatgttttcatgctgtgcag
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CTTTCTATCGAGTATTATGATTCATGCTACTCGACCTTTCATAGAAAATCAATGGATACAAACAAAAATTGAAGGCCAGGAGGTTTCCGGGACAGTTGAGgtatgttgtcaaaggaccttgaaggaaaatgttactaaaattcggcttgctag------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193549712|gb|FK509661.1|FK509661EST: AATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAG CATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCT
genomic: AATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgta ... tgctgtgcagCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCTTTCAAGTGTGATGATTCATGCAACCCGACCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGgtgtgttgtactgtaccttttaacttttgaatgtgggaatttcttacattaaatatgtacaatattttttgtgtaataatcgatacccttgagtcattcttttgagcattgatgttttcatgctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG