Sequence
atgc intronic sequence ATGC exonic sequenceATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg...
Basic information
species | Glycine max |
transcript | GLYMA01G01850.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 5'ss of exon 11
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaag---------atcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg
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CTTGAGATTTTGTCAAACGGCGGCTCCCTTCATGAGGTGGCACATATTGCAAATGGATCACATCCAAGGAATTGCATCTCTCTTCTTCGCATTAACgtgagtacccaattaccacctctctgaatgatgccatgttttttcgtccttgtagtagttaatttcctgattcaagagcatgatcataataattgaagtg---------
upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G123140_T02 (Zea mays), 5'ss of exon 9
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcaccttt-ttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg--
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CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAAATGGATCACACCCAAAGAATTGCATTTCTCTTCTTAGAATCAATgtgagtacatcgtttctgctgctg-actgttggggtttgttactcacagccctcatatttgagggcttcaagagcat--aatcacttgagttatccattttat
upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46880.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg
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CTAGAGGTTTTGTTCAATGGTAATTCACCTCATGAAGTTGCTCATATCGCAAATGGTTCACATCCTGGAAATTGCATCTCTCTTCTTCGAATCAATgtaag------tttcaaaccttcattaaaaccctaattcaaagatttcaattttttccgaataaattagggtttttgcag--------------------
upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G17710.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg
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CTGGAGATCTTGTTCATGGGTAGTTCATTTCAAGAAGTTGCTCATATCGCTAATGGCTCACATCTTGGAAATAGCATCTCTCTTCTTCGGATCAATgttagtgattgattcaaaatccc--aacaaaaaaaaaaatcgaattttgattttaaaacttaaaaagtttggtttttgaattacag--------------
upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 10
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtcc---ccttcttgtctctccaatagaagaaaaaaaacatatg-----
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CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaag--tcttttcta---ctatacag-atagttctataatatt--ttcccttatcataattcagatctactgatcattaacataggaaaccaacataatcagtgtatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151393795|gb|EV263670.1|EV263670EST: TTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT GTAGCAAGCAACTCATCCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTG
genomic: TTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcat ... atatatgcagGTAGCAAGCAACTCATCCC-AGAACGTAGAGCTAATGCTGCAAGAGAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa