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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCCGCCTCAATCCGAGGATTCCGACGTTTCCACCCTCATCCCTCCCGACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccatttctatttcccctttttttctcattcaaagataattcgcagtgtctgaactccgaaatggttttcatgttgccttcaattgattatctgaccag

Basic information

species Glycine max
transcript GLYMA20G38450.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38450.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 5'ss of exon 1
TGCGCCGCCTCAATCCGAGGATTCCGACGTTTCCACCCTCATCCCTCCCGACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgt---------atccatttctatttcccctttttttctcattcaaagataattcgcagtgtctgaactccgaaatggttttcatgttgccttcaattgattatctgaccag
  ||  |    |    ||||   | |  | |       | ||||| |||||||| || || || || ||||||||||||||||| ||||||||||| |||||         |   | |  || ||    ||    | |   | |||| || | ||   | | || |||    |   | ||  ||  | |  ||      | |         
CACGGAGGAGGAGGAGGAGGGAGCAGGTGCTGAGGTGATGATCCCGCCCGACAACCGCATCCCCGCCACCATCATCACCGGCTTCCTCGGCTCCGGGAAGgtcaggcttaaaaataataataattaagattcggctttaggtgaaaggta-tccgtgat-tttgcactgtagagatgcttgtatactactctcccacagtga---------

upper sequence: GLYMA20G38450.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G180418_T03 (Zea mays), 5'ss of exon 6
TGCGCCGCCTCAATCCGAGGATTCCGACGTTTCCACCCTCATCCCTCCCGACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccatttctatttcc---cctttttttctcattcaaagataattcgcagtgtctgaactccgaaatggttttcatgttgc-cttcaattgattatctgaccag
 ||| ||         |||   || |  ||    || || ||||| ||||||||||| || || || ||||||||||||||||| |||||||| ||||||||   | |     |  ||   |||   |    |  |     |   | ||| || |  ||| ||| |  || |  |    || | ||  ||  ||||| ||      
CGCGGCGGAGGCGGAGGAGTGCTCGGGTGTGGAGACGCTGATCCCGCCCGACAATCGCATCCCCGCCACCATCATCACCGGCTTCCTCGGCTCTGGCAAGgtccgcgtccgcctgccctaacctcagtgctaccgttggttagggtacgcggtttgggaagtcc-atgtgttgctagacttacactggaaacgattagcta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613718|gb|DB961215.1|DB961215
EST:     ACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAG                         ACGACACTGCTGAACCATATTCTCACCGCGGAGCATGGAAAACGAATTGCG
genomic: ACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... atctgaccagACGACACTGCTGAACCATATTCTCACCGCGGAGCATGGAAAACGAATTGCG
EST: gi|213618429|gb|DB967694.1|DB967694
EST:     ACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGTAAG                         ACGACACTGCTGAACCATATTCTCACCGCGGAGCATGGAAAACGAATTGCG
genomic: ACAATCGTATTCCGGCAACCATCATCACCGGCTTTCTCGGCTCCGGCAAGgtatccattt ... atctgaccagACGACACTGCTGAACCATATTCTCACCGCGGAGCATGGAAAACGAATTGCG