Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCATGACCGCCGCGGAGATCATGAGGCAGCAGATGAGGGTGACGGAGCACGATGATAATAGGTTGAGGAAAACCCTCTTGAGGACCCATGTTGGCCAAgtatgtctcatggtcttagtcatctttagtacgtatccatagtcttaacctgataggtactcgagttttttcaatttaccaagaagagataataaaactt...

Basic information

species Glycine max
transcript GLYMA20G34360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0049g01560.t01 (Vitis vinifera), 5'ss of exon 2
GCCCATGACCGCCGCGGAGATCATGAGGCAGCAGATGAGGGTGACGGAGCACGATGATAATAGGTTGAGGAAAACCCTCTTGAGGACCCATGTTGGCCAAgtatgtctca-tggtcttagtcatctttagtacgtatccat---agtcttaacctgataggtactcgagttttttcaatttaccaagaagagata-ataaaactt
|||  ||||  | |||||||||||||||||||||||||||||||| |||||   |||||||||| |  | || |||||| |||| | ||  |||||||||||| || ||| |  || ||  |||    |  |       |    |   ||  | | |     || | |   || |   || |  ||    |   | ||| |||  
GCCATTGACGTCGGCGGAGATCATGAGGCAGCAGATGAGGGTGACTGAGCAGAGTGATAATAGGCTACGCAAGACCCTCATGAGAAGCCTCGTTGGCCAAgtacgtatcagttatcatatgcatgaagaaaaaaggattaggaaaacgttctcttcaagttaacccaaaggttgt---ttcagaaaattaattcacatagaac--