1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGTACGTACTTTACGAGGGCGACACCGTTTCGGGGAACTTTGTTGTCGTCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaatctctatcacttttctcatctaatcatttgccctaatcacttgctaattgactcaattatcaatttactggtgagggtttatttttttag...
species | Glycine max |
transcript | GLYMA20G28900.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|151393248|gb|EV263123.1|EV263123
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|254323667|gb|GR840308.1|GR840308
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TTTTCT-GAGCTCTGATCA-CCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|193416534|gb|FK384466.1|FK384466
genomic: TTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: CGTACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCTACAGTATCAAGGGAACCTCTGGEST: gi|208203293|gb|GD996703.1|GD996703
genomic: CG-ACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCC-ACAGTATCAAGGGAACCTCTGG
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|192296416|gb|FG991610.1|FG991610
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|254323666|gb|GR840307.1|GR840307
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|13252173|gb|BG363076.1|BG363076
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|8826075|gb|BE209867.1|BE209867
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGTEST: gi|298194416|gb|HO041064.1|HO041064
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
EST: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACG GTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
genomic: TCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaa ... ttatctgcagGTGACAACTGCTGCAGGGAATACTGTCCACAGTATCAAGGGAACCTCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTACGTACTTTACGAGGGCGACACCGTTTCGGGGAACTTTGTTGTCGTCGACCATGACATTTTCTGGAGCTCTGATCACCCCGGCATTGATTTCACGgtcagtgcaatctctatcacttttctcatctaatcatttgccctaatcacttgctaattgactcaattatcaatttactggtgagggtttatttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgagg