1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCTTCCGATCCATCCTCGACAAGCCCCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctctctctctttctctctcttctctcctccatgatttccggcacctgataaacctccattcccctagatacattattatattataattaaaaca...
species | Glycine max |
transcript | GLYMA20G28840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAG GGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTEST: gi|208316001|gb|GE110983.1|GE110983
genomic: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctct ... gttcgtacagGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTT
EST: ATTTCTCTAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAG GGATGCGCAGGEST: gi|11413359|gb|BF425370.1|BF425370
genomic: ATTTCTC-AGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctct ... gttcgtacagGGATGCGCAGG
EST: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAG GGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTEST: gi|207703344|gb|GD685794.1|GD685794
genomic: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctct ... gttcgtacagGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTT
EST: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAG GGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTT
genomic: CATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctct ... gttcgtacagGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTTCCGATCCATCCTCGACAAGCCCCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGgtctctctctctctctttctctctcttctctcctccatgatttccggcacctgataaacctccattcccctagatacattattatattataattaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct