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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAACCTCGACGACTTATCAGTCAAAGAAGTCGGAGATGGCAATCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaacaaacactttcacgattcagccaaaacccaaaaaaacactttttttttttatgttccacaaaatcacgggcaatcgccaatttcgtttctttcttgtatag

Basic information

species Glycine max
transcript GLYMA20G26580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26580.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ06533 (Selaginella moellendorffii), 5'ss of exon 1
CGACAACCTCGACGACTTATCAGTCAAAGAAGTCGGAGATGGCAATCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaacaaacactttcacgattcagccaaaacccaaaaaaacactttttttttttatgttccacaaaatcacgggcaatcgccaatttcgtttctttcttgtatag
 |  |      | ||||   | || |||||||| |||||||||||||| ||||| |||| ||||||| |     |    || ||||| ||| | |||||||||| |   |     |  ||  ||||| |||      | ||   | ||| |||| |  |   ||||||                                         
GGGTAGTAAACAAGACTGGGCGGTTAAAGAAGTTGGAGATGGCAATCTCAACTTTGTCTACATTGTTACGGGTGCAAGCGGCTCTTTCGTCTTAAAACAGgtaagattta-----tcgcagcattcatcca----ttacaatggctcttgttttctcca---tccacag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567066|gb|AW234693.1|AW234693
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|18040792|gb|BM309086.1|BM309086
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|209713483|gb|BW679273.1|BW679273
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|192324081|gb|FK019372.1|FK019372
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|209726974|gb|BW680293.1|BW680293
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|14259302|gb|BG882210.1|BG882210
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|5820204|gb|AI988410.1|AI988410
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|298181549|gb|HO025724.1|HO025724
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|213594296|gb|DB969974.1|DB969974
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|20814789|gb|BQ299267.1|BQ299267
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|192298387|gb|FG988433.1|FG988433
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|8825853|gb|BE209583.1|BE209583
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|10710408|gb|BF010099.1|BF010099
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|151395513|gb|EV265390.1|EV265390
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|298165118|gb|HO011167.1|HO011167
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
EST: gi|298191511|gb|HO038990.1|HO038990
EST:     ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAG                         GCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG
genomic: ACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGgtaacaaaca ... tcttgtatagGCTCTGCCGTACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAG