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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAAGCCCTCCGTCTGCACCGCCGACGAACTCCACTATGTCTCCCTCTCCAATTCCGATTGGAAACTCGCTCTCTGGCGCTACCACCCTTCGCCTCTCgttagtttttgtttcttcattcgaatcgcacctatttctgttctctctttataattttgttacattttcttaggatactatgtttgtttcgtag

Basic information

species Glycine max
transcript GLYMA20G25590.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25590.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g04120.t01 (Vitis vinifera), 5'ss of exon 1
CGACAAGCCCTCCGTCTGCACCGCCGACGAACTCCACTATGTCTCCCTCTCCAATTCCGATTGGAAACTCGCTCTCTGGCGCTACCACCCTTCGCCTCTCgttagtttttgtttcttcattcgaatcgcacctatttctgttctctctttataat--tttgttacattttcttaggatactatgtttgtttcgtag----------------------------------------------------------------------------------------------------------
 || ||||| ||  |||| || |||||||| || |||||||||||| | || ||||||||||||| ||||||||| |||||||||   ||||| ||||  ||   |||   | || |   ||      |||  |||| | ||  ||   || |||      | | |   |   |||| |  || |||    |  |                                                                                                           
AGAGAAGCCTTCGATCTGTACGGCCGACGAGCTTCACTATGTCTCCGTGTCGAATTCCGATTGGAGACTCGCTCTGTGGCGCTACTCTCCTTCCCCTCAGgtctctttcactctcctttctc------cacggatttgtatttcctagataaaataacacatgataaaattggaggaaataattttttccccagaagcgtttctccgttgaacaagtaaaggcgttttttcctgtaaaaagcattccaaattaatcattgcaattttttggtaattgttttgtgtggaatgtgaaatgatag