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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGgtattcattcgccaattcccactttcttctgctactgctacttctatctagaatagtgacgatcgccttgcgtttttttggtttgatttaagtctgtatg...

Basic information

species Glycine max
transcript GLYMA20G24040.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 1
TTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGgtat--tcattcgccaattcccactttcttctgctactgctacttcta---tctagaatagtgacgatcgccttgcgtttttttggtttgatttaagtctgtatg
| ||||| |||||||| ||||||||||||| || || |||| || ||| ||  |||| || |||||||| ||||||| ||||||  || ||||||| ||||| |  || |  |  |  |     |||     | |   | |  ||      | | |   |  |  | | |  | | ||||| ||||  || |    | | |    
TCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGgtgtgctcttctgatatctgaagttttgaaggggtttcgttgatttgggggttttggggatcgtgggttgggtagggttttgttggaatggt--gggccggg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6951314|gb|AW423313.1|AW423313
EST:     ATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAG                         GGAAAGTCGGGTG-AGGTTCGGCAGGCTGCAGGGTTATATCTGAAGAATAA
genomic: ATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGgtattcattc ... tattgaacagGGAAAGTCGG-TGGAGGTTCGGCAGGCTGCAGGGTTATATCTGAAGAATAA