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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTCCATCTTCTTCTTCTCCCTTTTCTATATTCCCTTCAAGAAGAACTTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattcttttcactttcccttttcttttctgcatcagttttcttcaattttgtgattttcttttttcag

Basic information

species Glycine max
transcript GLYMA20G23970.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532027|gb|EH260160.1|EH260160
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|151406646|gb|EV276461.1|EV276461
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|254328089|gb|GR835054.1|GR835054
EST:     CAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|193313543|gb|FK278742.1|FK278742
EST:     CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|7796356|gb|AW781753.1|AW781753
EST:     CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: CAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA
EST: gi|9563944|gb|BE473453.1|BE473453
EST:     TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTCACCCTCCTCCAAGC                         GTGATGATGCTCGCGATTCACACTCTAACCAAAACAATCTTCCTATTCTCA
genomic: TTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattc ... cttttttcagGTGATGATGCTCGCGATTCAGACTCTAACCAAAACAATCTTCCTATTCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCTTCCATCTTCTTCTTCTCCCTTTTCTATATTCCCTTCAAGAAGAACTTCCCTTTCTCCTCCCAAGACTCTCCAATTTCGTTTACCCTCCTCCAAGCgtgtgtattcttttcactttcccttttcttttctgcatcagttttcttcaattttgtgattttcttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC