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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgggtcgacttggaaattggactaaactgct...

Basic information

species Glycine max
transcript GLYMA20G23250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 1
ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctacc---ctcattgattttagtttaaatta---tgtaactttggtccaattccagaaatgggtcgacttggaaattggactaaactgct
 |  |  || ||||| || || |||||||||||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| || ||||||||||  |||    |||   | | |   |  ||        ||||   ||    ||   ||   || | | |||     | ||  || || ||   |     |||||| |
GCCATACGTGCTCACCACGCCGCTCTACTACGTCAACGCCCCGCCGCACATGGGGAGCGCCTACACCACCATTGCCGCCGACGCCATCGCCCGCTTCCAGg--caagcaactaaagcgagcaagcctatgcgcgcgcgtttgcgttccattgctgctcgcgttctaatcccagtctagg--gattttgag--tacgtcaaactgtt

upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G029055_T02 (Zea mays), 5'ss of exon 1
ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctcattgattttagtttaaattatgtaact-ttggtccaattccagaaatgggtcgacttggaaattggactaaa-ctgct
 | ||  || ||||| || ||||||||||||||||| ||||| || || ||||| ||||| |||||||||||||| || || ||||| || ||||||||||  |||  ||| | |        ||  |  | || |||  |  |  ||  | | |  || |    || ||   |   |        ||| || | | |  ||
GCCCTACGTGCTCACCACTCCTCTCTACTACGTCAACGCTCCGCCGCATATGGGAAGCGCCTACACCACCATCGCAGCGGACGCCATCGCCCGCTTCCAGg--caagcctccacccacgattgcagcggctgtatttttgaacagttagttgtcgaacctacaaaagcaaattgcacatgcccgggttgcacgagatccact

upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 5'ss of exon 1
-ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctcattgattttagtttaaattatgtaactttggtccaattccagaaatgggtcgacttggaaattggactaaactgct
 ||| ||||||||||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||||||   ||||| |||  |            | |   ||||| | |  |  |||     |||   ||   ||  |  |  | |  ||  |  ||       
GACA-TTTGTCCTCACCACTCCTCTTTATTACGTTAATGCCCCTCCCCACATGGGTAGTGCTTACACCACTATCGCCGCCGATTCAATTGCTCGTTTCCAGgtttgtttctcaatcagt-----------ctctgacttaaagtttcaatttttaaaggaatcaaagtgttgattttatgttgttatctgtgtag------

upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 1
ACACTTTGTCCTCACTACCCCTCTCTACTACGTCAATGCTCCTCCCCACATGGGTAGCGCTTACACCACCATCGCTGCCGATGCCATTGCTCGCTTCCAGgttcaattctctatctctaccctc-attgattttagtttaaattatgtaactttggtccaattccagaaatgggtcgacttgg----aaattggactaaactgct
    || |||||||| || || || || ||||| ||||| |||||||||||||| || || |||||||| || ||||| || ||||||||||| || ||||| |  |  | | |   | |  |  ||||  ||  | ||     | |  |   | ||    ||    | ||  ||    ||||    |||  |||  |||     
TTCTTTCGTCCTCACGACTCCGCTTTATTACGTAAATGCCCCTCCCCACATGGGAAGTGCCTACACCACTATTGCTGCTGACGCCATTGCTCGATTTCAGgtaccctgttgtttgatttcttttgattgtattcggcttcgtggaagggatgattgttattttgttaacatttgtttggttggtgagaaagcggagaaaa-----