Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGTTTAGGGTGCGAAACCCTGACCTCCGCTTTCTCATTCTTCTCTCTCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacccttccttcttctcttctctcactagatcgcgaccctgatttttcgtgtttttcaattctgcattgttctgttcgaattaggcattaattt...

Basic information

species Glycine max
transcript GLYMA20G23080.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600783|gb|DB956217.1|DB956217
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|254332429|gb|GR843906.1|GR843906
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|209719566|gb|BW651018.1|BW651018
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|209711757|gb|BW678939.1|BW678939
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|213613490|gb|DB956948.1|DB956948
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|213587860|gb|DB959684.1|DB959684
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|5770360|gb|AI973534.1|AI973534
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|193402201|gb|FK368904.1|FK368904
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|213599236|gb|DB960004.1|DB960004
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|17401784|gb|BM178566.1|BM178566
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|21595442|gb|BQ610481.1|BQ610481
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|6666007|gb|AW277466.1|AW277466
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|7283812|gb|AW596414.1|AW596414
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|17023092|gb|BM094126.1|BM094126
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|24135667|gb|BU926177.1|BU926177
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|24136611|gb|BU927121.1|BU927121
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|7692393|gb|AW760501.1|AW760501
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|6454145|gb|AW184893.1|AW184893
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|213611686|gb|DB969074.1|DB969074
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|193629461|gb|FK575931.1|FK575931
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTAGGAAAAAAGATGAGAAC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATT-GGAAAAAAGATGAGAAC
EST: gi|9264547|gb|BE352694.1|BE352694
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|18692916|gb|BM521764.1|BM521764
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGCTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|254315486|gb|GR825295.1|GR825295
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|48575042|gb|CO036205.1|CO036205
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|254348788|gb|GR852467.1|GR852467
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|15813480|gb|BI785755.1|BI785755
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|209721183|gb|BW659195.1|BW659195
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|209698331|gb|BW678062.1|BW678062
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|10710585|gb|BF010303.1|BF010303
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGAAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
EST: gi|213617209|gb|DB965164.1|DB965164
EST:     TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATG                         ACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC
genomic: TCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacc ... gtgaatgcagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGCGTTTAGGGTGCGAAACCCTGACCTCCGCTTTCTCATTCTTCTCTCTCTCTTGTCCATCACTTCCGCCAAGGTCTTCTTCGAGGAGCGTTTCGATGgtatcaaacccttccttcttctcttctctcactagatcgcgaccctgatttttcgtgtttttcaattctgcattgttctgttcgaattaggcattaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac