1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCAAAATCGCTGACCCAAGCGGCGGCATGCTCTCTCAGCATTGGGAACCCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGgttagttagcttattagcaccaataatttcttcccacactaccctttttgttgaaaccgtgtttggcgaatgtggttatgtacag
species | Glycine max |
transcript | GLYMA20G22760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTG TTGATAAATGAATTCGTGGAGAAAGAAGGGATCTTGGTGGATGGGGACTGGEST: gi|16996579|gb|BM085951.1|BM085951
genomic: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGgttagttagc ... ttatgtacagTTGATAAATGAATTCGTGGAGAAAGAAGGGATCTCGGTGGATGGGGACTGG
EST: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTG TTGATAAATGAATTCGTGGAGAAAGAAGGGATCTTGGTGGATGGGGACTGGEST: gi|213613744|gb|DB961241.1|DB961241
genomic: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGgttagttagc ... ttatgtacagTTGATAAATGAATTCGTGGAGAAAGAAGGGATCTCGGTGGATGGGGACTGG
EST: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTG TTGATAAATGAATTCGTGGAGAAAGAAGGGATCTCGGTGGATGGGGACTGG
genomic: CCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGgttagttagc ... ttatgtacagTTGATAAATGAATTCGTGGAGAAAGAAGGGATCTCGGTGGATGGGGACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCAAAATCGCTGACCCAAGCGGCGGCATGCTCTCTCAGCATTGGGAACCCTTCGCCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGgttagttagcttattagcaccaataatttcttcccacactaccctttttgttgaaaccgtgtttggcgaatgtggttatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC