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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTCAGCAGCGCATTATAGCACACCACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgtcatcatcatcgatccatcgatctaactctctctttctcttccttctaaccgctgtttccgcatctcgcttccttcccaaactgtagattc...

Basic information

species Glycine max
transcript GLYMA20G22600.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208157219|gb|GD954561.1|GD954561
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|213591295|gb|DB959865.1|DB959865
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|5605873|gb|AI899971.1|AI899971
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|209716478|gb|BW657522.1|BW657522
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|18039891|gb|BM308185.1|BM308185
EST:     CAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: CAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207797231|gb|GD768971.1|GD768971
EST:     ACAC-AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207687196|gb|GD667882.1|GD667882
EST:     ACANAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGG-TTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|209721765|gb|BW666385.1|BW666385
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|7686353|gb|AW757001.1|AW757001
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|254333709|gb|GR848627.1|GR848627
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|213607101|gb|DB965071.1|DB965071
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|213604448|gb|DB970624.1|DB970624
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|298175413|gb|HO015046.1|HO015046
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAGTGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|209700632|gb|BW670435.1|BW670435
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|213593805|gb|DB957925.1|DB957925
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|209696848|gb|BW680470.1|BW680470
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|254327042|gb|GR836651.1|GR836651
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|8826044|gb|BE209774.1|BE209774
EST:     AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|209702060|gb|BW670544.1|BW670544
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGG                         T
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCAT-GGgtatgtatgt ... attctggcag-
EST: gi|193422705|gb|FK385922.1|FK385922
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|298177763|gb|HO027316.1|HO027316
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAGTGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|193375822|gb|FK343069.1|FK343069
EST:     TTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: TTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|8826054|gb|BE209784.1|BE209784
EST:     AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207700672|gb|GD682239.1|GD682239
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGG-TTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|213591448|gb|DB955740.1|DB955740
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|26058927|gb|CA801841.1|CA801841
EST:     AAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: AAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207717630|gb|GD698628.1|GD698628
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|209699787|gb|BW655800.1|BW655800
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207760094|gb|GD731863.1|GD731863
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|298189801|gb|HO038204.1|HO038204
EST:     ACACAAAAAAGTAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAGTGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|207793023|gb|GD765181.1|GD765181
EST:     ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: ACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
EST: gi|8825941|gb|BE209671.1|BE209671
EST:     AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGG                         GTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG
genomic: AAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgt ... attctggcagGTAAATGAATGGTTTTTGAGCAACAGCAGTTAAAAGAGAAAAGGGATTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTGTCAGCAGCGCATTATAGCACACCACACAAAAAAGCAAAACAGAGAGAACAACTGTTACTCACACACGCCATGGgtatgtatgtcatcatcatcgatccatcgatctaactctctctttctcttccttctaaccgctgtttccgcatctcgcttccttcccaaactgtagattc

- - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc