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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGAGGTACAAAACCCTAATCACCGCTTCGAGCTCTGTCATTGTCTCAAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtaccttcttcttgcactacccgaacttaattatcttccattttatttcattcacttaatcatcttggcagcaacgtataagcctgtttactatgc...

Basic information

species Glycine max
transcript GLYMA20G21250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295086|gb|FG986805.1|FG986805
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|58022880|gb|CX709621.1|CX709621
EST:     GCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: GCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|10234556|gb|BE803444.1|BE803444
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|207759847|gb|GD732288.1|GD732288
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCCTAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|12689942|gb|BG156278.1|BG156278
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|58020838|gb|CX707580.1|CX707580
EST:     CAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: CAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|14990237|gb|BI315910.1|BI315910
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|208294662|gb|GE094383.1|GE094383
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCGTTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|7588010|gb|AW703815.1|AW703815
EST:     GCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: GCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|151400274|gb|EV270088.1|EV270088
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|17964468|gb|BM271203.1|BM271203
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|5677258|gb|AI938388.1|AI938388
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTGGCATATTATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|31464033|gb|CD406061.1|CD406061
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACGATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACTATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|192308445|gb|FK002817.1|FK002817
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|31312516|gb|CD397719.1|CD397719
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|21600407|gb|BQ610738.1|BQ610738
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|254325850|gb|GR838731.1|GR838731
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|192327100|gb|FK015492.1|FK015492
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|207830383|gb|GD802397.1|GD802397
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|18692955|gb|BM521803.1|BM521803
EST:     AGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|254324568|gb|GR833993.1|GR833993
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|31469700|gb|CD411728.1|CD411728
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACNATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|208150579|gb|GD945108.1|GD945108
EST:     CTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: CTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|192310362|gb|FK002242.1|FK002242
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGTCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|192323685|gb|FK015991.1|FK015991
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|151399653|gb|EV269524.1|EV269524
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|18848468|gb|BM567685.1|BM567685
EST:     AGCATTCTACAATGGCC                         ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
EST: gi|192324854|gb|FK016070.1|FK016070
EST:     AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCC                         ACTATTCCGGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC
genomic: AAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtacct ... gtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTGAGGTACAAAACCCTAATCACCGCTTCGAGCTCTGTCATTGTCTCAAGTTCCAGGTTTCAGCGATTTCGATCTCGCATAGCATTCTACAATGGCCgtgagtaccttcttcttgcactacccgaacttaattatcttccattttatttcattcacttaatcatcttggcagcaacgtataagcctgtttactatgc

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