Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTACCGTCACACCCCAATCGTAGCCGTCGCACTTTGCGTTTTCTGCGTCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcctcaatcaaccttcaccaattgcaattgaccacatcaatagctaacatttcaattgttttttcgtgtgtttttgtgtgcgcag

Basic information

species Glycine max
transcript GLYMA20G21190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 1
GGTTTACCGTCACACCCCAATCGTAGCCG---TCGCACTTTGC--GTTTTCTGCGTCA-TCTCCGATTCCCCG--ACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtg-----actcactcattcctcaatcaaccttcaccaattgcaattgaccacatcaatagctaacatttcaattgttttttcgtgtgtttttgtgtgcgcag
          | |  | |||||| || |    ||  |||  |   ||   || | ||  || || ||||  ||  ||||||||||||||||||||||||||| ||||||||     |  |  ||||  |||  |    |    |  ||   | |   |  | |   |  ||  |       | ||| |  | |   ||||| | || ||||
--------CACGCCTCTCAATCGCAGGCAGGCTCTTACTCGGTCGGTCGCCTTCTTCGGTCGCCAATTCGACGCTACAATGGCCACCCAAATGAGCAAGAAGCGAAAGgtgtgtgtaacccatcatcgctcttttctgcaaatctgataatactaccctgcttggttcacttgctcactgctggttctcccttccctttttctatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182456|gb|HO031191.1|HO031191
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|58018699|gb|CX705441.1|CX705441
EST:     TCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|151394186|gb|EV264057.1|EV264057
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|21678027|gb|BQ630378.1|BQ630378
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|24205643|gb|BU964896.1|BU964896
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192316858|gb|FK006085.1|FK006085
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|10845025|gb|BF068214.1|BF068214
EST:     CCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: CCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192325123|gb|FK019069.1|FK019069
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|48575088|gb|CO036228.1|CO036228
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|37996532|gb|CF808121.1|CF808121
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|7041963|gb|AW471857.1|AW471857
EST:     CGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: CGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192324902|gb|FK015383.1|FK015383
EST:     TCATCTCCGATTCCCCGACAATGGTCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|209718519|gb|BW674683.1|BW674683
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|213603394|gb|DB966569.1|DB966569
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|58024786|gb|CX711527.1|CX711527
EST:     CAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: CAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|13481301|gb|BG510644.1|BG510644
EST:     TCATCTCCGATTCCATGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|7925503|gb|AW831529.1|AW831529
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|26268284|gb|CA819347.1|CA819347
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|57576092|gb|CX549063.1|CX549063
EST:     GGCCACCCAATTGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: GGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|9901298|gb|BE610266.1|BE610266
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|298174155|gb|HO017491.1|HO017491
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|18040358|gb|BM308652.1|BM308652
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|13240447|gb|BG359756.1|BG359756
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192326793|gb|FK017360.1|FK017360
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAATGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|8404055|gb|BE059689.1|BE059689
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|9986821|gb|BE660929.1|BE660929
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|209701714|gb|BW655895.1|BW655895
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192316859|gb|FK006086.1|FK006086
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|19934412|gb|BQ079442.1|BQ079442
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|18040338|gb|BM308632.1|BM308632
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|18040077|gb|BM308371.1|BM308371
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192303477|gb|FG994483.1|FG994483
EST:     TCATCCCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|4292317|gb|AI437745.1|AI437745
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|6915481|gb|AW397011.1|AW397011
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|15663235|gb|BI700606.1|BI700606
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|21600670|gb|BQ611001.1|BQ611001
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|254316296|gb|GR827833.1|GR827833
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|192315548|gb|FK009700.1|FK009700
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|9820315|gb|BE555825.1|BE555825
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|209721033|gb|BW666290.1|BW666290
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|298176664|gb|HO026785.1|HO026785
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG
EST: gi|13562761|gb|BG550981.1|BG550981
EST:     TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAG                         TTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACTTGGTTGGGACAAGG
genomic: TCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcact ... gtgtgcgcagTTCGTAGCTGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTACCGTCACACCCCAATCGTAGCCGTCGCACTTTGCGTTTTCTGCGTCATCTCCGATTCCCCGACAATGGCCACCCAAATGAGCAAGAAGAGAAAGgtgactcactcattcctcaatcaaccttcaccaattgcaattgaccacatcaatagctaacatttcaattgttttttcgtgtgtttttgtgtgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA