Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCAGCAGATCACCGAGGCCTGGGCTGTGGCACAGAGATTGGACCTTGTTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgcttagctataaatgctattaacattttatcattgctatgagaaatcctagtaatgtgtttttgtgtaggcacatggtatttgttcgctggagg...

Basic information

species Glycine max
transcript GLYMA20G19000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19000.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0051g00650.t01 (Vitis vinifera), 5'ss of exon 1
TGCTCAGCAGATCACCGAGGCCTGGGCTGTGGCACAGAGATTGGACCTTGTTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgttttt--gcttagctataaatgct--attaacattttatcattgctatgagaaatcctagtaatgtgtttttg-tgtaggcacatggtatttgttcgctggagg
||| ||||||||||| ||||||||||  |||||  || | ||||| || || || || ||||| |||||||||||||||||  |  | || ||||||||||| |    |  ||    | ||| |    ||   |  ||    ||   |  ||   | || || |||  |  ||  |||   ||       ||| ||   |     
TGCCCAGCAGATCACGGAGGCCTGGGGGGTGGCGGAGCGCTTGGATCTGGTCGGGCCGATTGTGGAACAGCCTGAGTATAATTTGCTATCTAGGCACAAGgtatgcagggctattagtgaatacccagttgggaaatttgatttttgactagttttgcttgtgatggttgattaatgtgttcattaaagctttatttttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053973|gb|BM732640.1|BM732640
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|37995790|gb|CF807379.1|CF807379
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACC
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCAC-
EST: gi|192316315|gb|FK011674.1|FK011674
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|192302761|gb|FG993781.1|FG993781
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|7924550|gb|AW830576.1|AW830576
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|23731385|gb|BU763810.1|BU763810
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|10234663|gb|BE803551.1|BE803551
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAT                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|9819631|gb|BE555144.1|BE555144
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|26057670|gb|CA800584.1|CA800584
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|10844260|gb|BF067570.1|BF067570
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|6727056|gb|AW311410.1|AW311410
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|26048175|gb|CA784741.1|CA784741
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
EST: gi|20812207|gb|BQ296685.1|BQ296685
EST:     TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAG                         GTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT
genomic: TTGGTCCTATTGTTGAACAGCCTGAGTATAACCTCTTGTCCAGGCACAAGgtttttgctt ... aatgttgcagGTTGAGTCTGAGTTTCTTCCTCTGTACACCAACTATGGCACAGGCCTCACT