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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGCACCGCGCAGCTCGCACTTGCAGCAGCATTTGAACTCTACTATCGTTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtctgcaacacctcatttctgcaatcaatccatgaaaccacgaaaatcgtccgttttttttttctgtattttgaatggctaagattatgatttt...

Basic information

species Glycine max
transcript GLYMA20G18440.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294286|gb|FG986375.1|FG986375
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|192326367|gb|FK017669.1|FK017669
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|19054300|gb|BM732967.1|BM732967
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|193689798|gb|FK632317.1|FK632317
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|7588075|gb|AW703878.1|AW703878
EST:     TTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|192305354|gb|FG994036.1|FG994036
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|23728179|gb|BU762135.1|BU762135
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|298192581|gb|HO033015.1|HO033015
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
EST: gi|151394202|gb|EV264073.1|EV264073
EST:     TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCG                         GTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT
genomic: TTTTCTCCGTTCTTTCTCAAAGCCGCACTCAACTTTCTAAAACCAAATCGgtaagagtct ... ttatcaacagGTTTGAATCCTCATTTCCCGCCTCTCACTGGAAAGCAGCAAAATCACCTT