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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGgtacgctactctcttccgattagggtttttttttctcgtgaatcgcacttttccgattactgtctcacttctgattttattcgatctctcag

Basic information

species Glycine max
transcript GLYMA20G16860.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 5'ss of exon 2
----------ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGgtacgctactctcttccgattagggtttttttttctcgtgaatcgcacttttccgattactgtctcacttctgattttattcgatctctcag-------------------------
          |||||  | ||  | ||||| ||||||| |||||| || ||||| |||||||||||||| |||| ||||||||||||| ||||  | ||||| ||         | |   | |     |    |    ||  |    |||||    ||  | | ||  | ||  ||||  |||     |                            
GTGGGTGGTGATGGGGATAGAAGATTACCATGTCATCGTGCTCGTTGGGGAGGGCTCCTTCGGGAAGGTGTACATGGGAAGGCGCAAGTACACTCGCCAGgttcgtgctctggattccgctcgtacggtgaaatggaatggttaattcttttttcttttttttttc--tgctagttttgctcggaagtttgattgcttctgtttaaatttgtttcag

upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 1
ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGgtacgctactctcttccgattagggtttttttttctcgtgaatcgcacttttccgattactgtctcacttctgattttattcgatctctcag
|||||||| |||||||| || || |||||||||||||||||||| || || |||||||| ||||||||||||||||||  ||| || |||||         |||      ||   ||| ||||||| |    | || | |   ||||   |    ||                         
ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgt---------tctgtgagctacattttgtttttcttgc---ttgcccctgatcgatcgatcgaccag------------------------

upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 1
ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGgtacgctactctcttccgattagggtttttttttctcgtgaatcgcacttttccgattactgtctcacttctgattttattcgatctctcag
      || |||||||| || || |||||||||||||||||||| || ||||||||||| ||||||||||||||||||  ||| || ||||| |  |    | |||    | |    |  |       |  |                                                  
------GTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTCGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGGTTCATtttggttttcttgcttgcccctgatcgatcgatcgac-------------------------------------------------