1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccctctccttttttttttcttcttgttttgctctctttatcaaatcttatttttcctttaatctaattcgcggttctctatattttcaataacaataagttgaatcctttgaggaattgatatgtcaagaaattcttcctttctaattctaaattgattttgctgacagatgtttcttgtgctttgtag
species | Glycine max |
transcript | GLYMA20G16100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCEST: gi|14205657|gb|BG839335.1|BG839335
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCA-GGMTGCEST: gi|192313456|gb|FK005522.1|FK005522
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: GATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCCCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCEST: gi|58019242|gb|CX705984.1|CX705984
genomic: GATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCEST: gi|58018944|gb|CX705686.1|CX705686
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCEST: gi|21602164|gb|BQ612495.1|BQ612495
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGCEST: gi|254346210|gb|GR859823.1|GR859823
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTG GTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
genomic: TGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccc ... tgctttgtagGTCTGCCTCCACGATACAGAGATTCAGTAAGAACAATAACTCCAGGGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCATCAGAGTCTCTGCCTAAGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCAGAGAATCTCCAAAGACAGCTCTTTGgtgtgtcccctctccttttttttttcttcttgttttgctctctttatcaaatcttatttttcctttaatctaattcgcggttctctatattttcaataacaataagttgaatcctttgaggaattgatatgtcaagaaattcttcctttctaattctaaattgattttgctgacagatgtttcttgtgctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC