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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTGAGGAGCTCTCTGCCTGTTGACTCAGTCATGAACTGGTATCTTGCTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgatatgtataaacaaacccttttgttgtacttttctattgaaaaaatatatatataccttgctagctacaaatataaaaccagtttgcttgaatttcaatgggaaacagtgggttgtgttttctcacaaagttgcatttttgctgttggtggtgtag

Basic information

species Glycine max
transcript GLYMA20G08260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08260.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G32560.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAGCTGAGGAGCT-CTCTGCCTGTTGACTCAGTCATGAACTGGTATCTTGCTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgatatgtataaacaaacccttttgttgtacttt-tctattgaaaaaatatatatataccttgctagctacaaatataaaaccagtttgcttgaatttcaatgggaaacagtgggttgtgttttctcacaaagttgcatttttgctgttggtggtgtag
   | |  | | || |||||||  |||| ||   ||||| ||| || ||  | |||||  | ||   |||||||||||| |||||||| || ||||||||||||     |   || | | |    ||    || | |||| |  |||  |  ||  ||    ||    |||   |     |  || | |||                                                                          
-GGGATATGCATCTTCTCTGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcatttcataaacatagttgctccatttttgctttatggatttgattaaagtac---taagaggcttttttttggtgaaagagcag--------------------------------------------------------------------------

upper sequence: GLYMA20G08260.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 5'ss of exon 1
AAAGCTGAGGAGCTCTCTGCCTGTTGACTCAGTCATGAACTGGTATCTTGCTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgatatgtataaacaaacccttttgttgtacttttctattgaaaa---aatatatatataccttgctagctacaaatataa----aaccagtttgcttgaattt-caatgggaaacagtgggttgtgttttctcacaa-agttgcatttttgctgtt-ggtggtgtag
    | |||||||||  | || || || ||  |||||   |||||||||||||||||| ||||||  |||||||||||||| || || || || |||||||||||   | |   |        ||   | |      | | | ||  ||    ||| |     | ||||       |    || ||    ||| |  |  |||   |||    |      |  |||||| | | || ||| ||  |  |  |||||||||||  |  |     
CCCACAGAGGAGCTCAGTTCCAGTGGATTCCATCATGTCTTGGTATCTTGCTCTTGAGACTGGCAGGTTTTGGTTCCCTGCACAGGTTTACAATCGTGAGgtatggactgtaactgcttgtttccagctataaattgtctgtctttcaacttcaatctcccacttccttaaggctcatgtctacaacctaaacgaagtcacttctgtttattcttttgctctctgggtttt-tcttttcataatggaagtgtttttgctgtttagcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600860|gb|DB968824.1|DB968824
EST:     CTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAG                         AATGGTCATGTTGGATTCATGCT
genomic: CTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgata ... ggtggtgtagAATGGTCATGTTGGATTCATGCT
EST: gi|13478093|gb|BG507711.1|BG507711
EST:     CTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAG                         AATGGTCATGTTGGATTCATGCTATCTTGCTATGATGCTGAACTTAGCTAT
genomic: CTCTTGAGTCTGGCAATTTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgata ... ggtggtgtagAATGGTCATGTTGGATTCATGCTATCTTGCTATGATGCTGAACTTAGCTAT
EST: gi|13481894|gb|BG511237.1|BG511237
EST:     GTTCCCTGCTCAAGTCTATAACCGTGAG                         AATGGTCATGTTGGATTCATGCTATCTTGCTATGATGCTGAACTTAGCTAT
genomic: GTTCCCTGCTCAAGTCTATAACCGTGAGgtatgtgata ... ggtggtgtagAATGGTCATGTTGGATTCATGCTATCTTGCTATGATGCTGAACTTAGCTAT